Re: [GUSDEV] ISF defaults

[Steve F. <sfi...@pc...>]

Michael-

There is a table in gus called Core.ProjectInfo.  In contains info about 
your "project."   When you run a plugin, the plugin needs to know what 
the name of your project is so that all the rows you insert will be 
assigned to your project.   The plugin discovers the name of your 
project by looking in the gus.config file.

The error message is telling you that the gus.config file is declaring 
your project's name to be "Database Administration" while there is no 
row in Core.ProjectInfo with name set to "Database Administration". 

Have you looked at the rows in that table?  Is there one with name 
"Database Administration"?   On my GUS instance, I have a row with name 
"Database administration"  (note the small 'a').   I suspect that this 
row was put in by the gus installer.   So perhaps you just need to 
change your config file to that.

steve
mro...@cs... wrote:

>Steve,
>
>I understand that you are in charge of ISF.
>
>I am trying to run the ISF plugin in a brand new install and I get the
>following error:
>
> No row in Core.ProjectInfo has name = Database Administration'.  This
> value was found in the project= property of your gus.config file.  Please
> be sure it is correct and has been registered in the database
> **** GUS::PluginMgr::PluginError Failed running 'ga +meta --commit' with
> stderr:
> Operation now in progress**** GUS::PluginMgr::PluginError Failed
> running 'ga +update GUS::Supported::Plugin::InsertSequenceFeatures --
> commit' with stderr:
>
>I already checked my gus.config file and it has the entry
>
> project=Database Administration
>
>
>I would like to know if this and maybe other default values must be
>inserted into the database before trying to insert data.
>
>
>I found in the gusdev site the following:
>
>    From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32
>    for those of you who are using the beta version of the ISF plugin:
>    1. i will improve its documentation to indicate what it expects to
>       already be in the database:
>           - SequenceOntology   (InsertSequenceOntology plugin)
>           - NCBI Taxon   (LoadTaxon plugin)
>           - External database and release (InsertExternalDatabase and
>                                    InsertExternalDatabaseRls plugins)
>           - at least one row in SequenceType so you can say what type of
>             sequence you are loading (you can use LoadRow plugin for this)
>
>    2.  i will improve the error messages so that it better detects the
>        absence of these, and makes it more clear what to do.
>
>
>
>I am sorry if I ask the same question so many times but I am stuck and can
>not continue until I find an answer.
>
>
>Thank you
>
>
>Michael Robinson
>Bioinformatics Research Group (Biorg)
>Florida International University
>Miami, Florida, USA 33199
>
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