From: <mro...@cs...> - 2006-11-09 16:41:13
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Steve, The Core.ProjectInfo table is empty, so I will create a record in project_id | numeric(4,0) | not null name | character varying(40) | not null description | character varying(255) | release | character varying(20) | modification_date | timestamp without time zone | not null user_read | numeric(1,0) | not null user_write | numeric(1,0) | not null group_read | numeric(1,0) | not null group_write | numeric(1,0) | not null other_read | numeric(1,0) | not null other_write | numeric(1,0) | not null row_user_id | numeric(12,0) | not null row_group_id | numeric(4,0) | not null row_project_id | numeric(4,0) | not null row_alg_invocation_id | numeric(12,0) | not null Indexes: "pk_projectinfo" primary key, btree (project_id) with the value "Database Administration" to match my gus.config file, now I assume that this value correspond to the field "name". Do I need to put any data in the other fields or is this up to me? Also before running ISF do I need to put any data in: - SequenceOntology (InsertSequenceOntology plugin) - NCBI Taxon (LoadTaxon plugin) - External database and release (InsertExternalDatabase and InsertExternalDatabaseRls plugins) - at least one row in SequenceType so you can say what type of sequence you are loading (you can use LoadRow plugin for this Thanks very much Michael R > Michael- > > There is a table in gus called Core.ProjectInfo. In contains info abou= t > your "project." When you run a plugin, the plugin needs to know what > the name of your project is so that all the rows you insert will be > assigned to your project. The plugin discovers the name of your > project by looking in the gus.config file. > > The error message is telling you that the gus.config file is declaring > your project's name to be "Database Administration" while there is no > row in Core.ProjectInfo with name set to "Database Administration". > > Have you looked at the rows in that table? Is there one with name > "Database Administration"? On my GUS instance, I have a row with name > "Database administration" (note the small 'a'). I suspect that this > row was put in by the gus installer. So perhaps you just need to > change your config file to that. > > steve > > mro...@cs... wrote: > >>Steve, >> >>I understand that you are in charge of ISF. >> >>I am trying to run the ISF plugin in a brand new install and I get the >>following error: >> >> No row in Core.ProjectInfo has name =3D Database Administration'. Thi= s >> value was found in the project=3D property of your gus.config file. >> Please >> be sure it is correct and has been registered in the database >> **** GUS::PluginMgr::PluginError Failed running 'ga +meta --commit' wi= th >> stderr: >> Operation now in progress**** GUS::PluginMgr::PluginError Failed >> running 'ga +update GUS::Supported::Plugin::InsertSequenceFeatures -- >> commit' with stderr: >> >>I already checked my gus.config file and it has the entry >> >> project=3DDatabase Administration >> >> >>I would like to know if this and maybe other default values must be >>inserted into the database before trying to insert data. >> >> >>I found in the gusdev site the following: >> >> From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32 >> for those of you who are using the beta version of the ISF plugin: >> 1. i will improve its documentation to indicate what it expects to >> already be in the database: >> - SequenceOntology (InsertSequenceOntology plugin) >> - NCBI Taxon (LoadTaxon plugin) >> - External database and release (InsertExternalDatabase and >> InsertExternalDatabaseRls plugins) >> - at least one row in SequenceType so you can say what type = of >> sequence you are loading (you can use LoadRow plugin for >> this) >> >> 2. i will improve the error messages so that it better detects the >> absence of these, and makes it more clear what to do. >> >> >> >>I am sorry if I ask the same question so many times but I am stuck and >> can >>not continue until I find an answer. >> >> >>Thank you >> >> >>Michael Robinson >>Bioinformatics Research Group (Biorg) >>Florida International University >>Miami, Florida, USA 33199 >> >> >> >> >> >> >> >> > |