[GUSDEV] [Fwd: ISF defaults]

[<mro...@cs...>]

I am resending this message because the original one was bounced back to =
me


---------------------------- Original Message ---------------------------=
-
Subject: ISF defaults
From:    mro...@cs...
Date:    Thu, November 9, 2006 10:39 am
To:      gus...@li...
Cc:      "Steve Fischer" <sfi...@pc...>
-------------------------------------------------------------------------=
-

Steve,

I understand that you are in charge of ISF.

I am trying to run the ISF plugin in a brand new install and I get the
following error:

 No row in Core.ProjectInfo has name =3D Database Administration'.  This
 value was found in the project=3D property of your gus.config file.  Ple=
ase
 be sure it is correct and has been registered in the database
 **** GUS::PluginMgr::PluginError Failed running 'ga +meta --commit' with
 stderr:
 Operation now in progress**** GUS::PluginMgr::PluginError Failed
 running 'ga +update GUS::Supported::Plugin::InsertSequenceFeatures --
 commit' with stderr:

I already checked my gus.config file and it has the entry

 project=3DDatabase Administration


I would like to know if this and maybe other default values must be
inserted into the database before trying to insert data.


I found in the gusdev site the following:

    From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32
    for those of you who are using the beta version of the ISF plugin:
    1. i will improve its documentation to indicate what it expects to
       already be in the database:
           - SequenceOntology   (InsertSequenceOntology plugin)
           - NCBI Taxon   (LoadTaxon plugin)
           - External database and release (InsertExternalDatabase and
                                    InsertExternalDatabaseRls plugins)
           - at least one row in SequenceType so you can say what type of
             sequence you are loading (you can use LoadRow plugin for thi=
s)

    2.  i will improve the error messages so that it better detects the
        absence of these, and makes it more clear what to do.



I am sorry if I ask the same question so many times but I am stuck and ca=
n
not continue until I find an answer.


Thank you


Michael Robinson
Bioinformatics Research Group (Biorg)
Florida International University
Miami, Florida, USA 33199