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From: <mro...@cs...> - 2006-11-09 15:45:33
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I am resending this message because the original one was bounced back to =
me
---------------------------- Original Message ---------------------------=
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Subject: ISF defaults
From: mro...@cs...
Date: Thu, November 9, 2006 10:39 am
To: gus...@li...
Cc: "Steve Fischer" <sfi...@pc...>
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Steve,
I understand that you are in charge of ISF.
I am trying to run the ISF plugin in a brand new install and I get the
following error:
No row in Core.ProjectInfo has name =3D Database Administration'. This
value was found in the project=3D property of your gus.config file. Ple=
ase
be sure it is correct and has been registered in the database
**** GUS::PluginMgr::PluginError Failed running 'ga +meta --commit' with
stderr:
Operation now in progress**** GUS::PluginMgr::PluginError Failed
running 'ga +update GUS::Supported::Plugin::InsertSequenceFeatures --
commit' with stderr:
I already checked my gus.config file and it has the entry
project=3DDatabase Administration
I would like to know if this and maybe other default values must be
inserted into the database before trying to insert data.
I found in the gusdev site the following:
From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32
for those of you who are using the beta version of the ISF plugin:
1. i will improve its documentation to indicate what it expects to
already be in the database:
- SequenceOntology (InsertSequenceOntology plugin)
- NCBI Taxon (LoadTaxon plugin)
- External database and release (InsertExternalDatabase and
InsertExternalDatabaseRls plugins)
- at least one row in SequenceType so you can say what type of
sequence you are loading (you can use LoadRow plugin for thi=
s)
2. i will improve the error messages so that it better detects the
absence of these, and makes it more clear what to do.
I am sorry if I ask the same question so many times but I am stuck and ca=
n
not continue until I find an answer.
Thank you
Michael Robinson
Bioinformatics Research Group (Biorg)
Florida International University
Miami, Florida, USA 33199
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