Re: [GUSDEV] InsertSequenceFeatures

[Steve F. <sfi...@pc...>]

the only documentation is what you get by running the plugin w/ --help

i can (try to) answer questions as they come up.

it may turn out that the best way to proceed is an orientation by phone.

steve

mro...@cs... wrote:

>Steve,
>
>I am almost ready to insert some bacteria sequences from genebank, and i
>have some questions.
>
>a - i found in the gusdev site the following:
>
> From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32
> for those of you who are using the beta version of the ISF plugin:
>   1. i will improve its documentation to indicate what it expects to
>      already be in the database:
>          - SequenceOntology   (InsertSequenceOntology plugin)
>          - NCBI Taxon   (LoadTaxon plugin)
>          - External database and release (InsertExternalDatabase and
>                                   InsertExternalDatabaseRls plugins)
>          - at least one row in SequenceType so you can say what type of
>            sequence you are loading (you can use LoadRow plugin for this)
>
>   2.  i will improve the error messages so that it better detects the
>       absence of these, and makes it more clear what to do.
>
>  About loading SO:
>    1. can you send the SO term with definition that is too big?
>
>    2. i understand about the rollback.  we have been discussing how to
>       undo a plugin.   for now, you need to do it with sql.
>
>  Thanks for helping us make this plugin better.
>
>  steve
>
>We did a new GUS install two weeks ago and i wonder if this applies to me,
>if it does could you tell me where do i find the documentation that you
>mention above.
>
>b - When I do a search in gusdev for "InsertSequenceFeatures" or parts of
>it, i get very little replies and somotimes none. Is there another way to
>find all documents in gusdev relating to this.
>
>Thank you
>
>Michael R
>
>
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