[GUSDEV] InsertSequenceFeatures

[<mro...@cs...>]

Steve,

I am almost ready to insert some bacteria sequences from genebank, and i
have some questions.

a - i found in the gusdev site the following:

 From: Steve Fischer <sfischer@pc...> - 2005-08-31 10:32
 for those of you who are using the beta version of the ISF plugin:
   1. i will improve its documentation to indicate what it expects to
      already be in the database:
          - SequenceOntology   (InsertSequenceOntology plugin)
          - NCBI Taxon   (LoadTaxon plugin)
          - External database and release (InsertExternalDatabase and
                                   InsertExternalDatabaseRls plugins)
          - at least one row in SequenceType so you can say what type of
            sequence you are loading (you can use LoadRow plugin for this=
)

   2.  i will improve the error messages so that it better detects the
       absence of these, and makes it more clear what to do.

  About loading SO:
    1. can you send the SO term with definition that is too big?

    2. i understand about the rollback.  we have been discussing how to
       undo a plugin.   for now, you need to do it with sql.

  Thanks for helping us make this plugin better.

  steve

We did a new GUS install two weeks ago and i wonder if this applies to me=
,
if it does could you tell me where do i find the documentation that you
mention above.

b - When I do a search in gusdev for "InsertSequenceFeatures" or parts of
it, i get very little replies and somotimes none. Is there another way to
find all documents in gusdev relating to this.

Thank you

Michael R