Re: [GUSDEV] ga +meta --commit

[Steve F. <sfi...@pc...>]

michael-

in the ones that had problems, you made a small error.   remove the 
'.pm' from your command line:

no:
 ga +create GUS::Supported::Plugin::LoadRow.pm --commit

yes:

 ga +create GUS::Supported::Plugin::LoadRow --commit


by the way, i'm not sure you need to do this pre-registration step 
anymore in 3.5.    i think the plugin auto-registers the first time you 
use it.

steve

mro...@cs... wrote:

>Steve,
>
>Thanks, it worked, but I got new problems, this is what I did:
>
>found
>at:http://genomics.upenn.edu/~dillo/research/theileria/gus-on-postgres-howto.html
>
>At postgres:
>
>insert into core.databaseversion (
>        database_version_id,
>        version,
>        modification_date,
>        user_read,
>        user_write,
>        group_read,
>        group_write,
>        other_read,
>        other_write,
>        row_user_id,
>        row_group_id,
>        row_project_id,
>        row_alg_invocation_id
>    ) values (
>        nextval('core.databaseversion_sq'),
>        3.5,
>        now(),
>        1, 0, 1, 0, 1, 0,
>        1, 1, 1, 1
>    );
>
>I checked the values in the core.databaseversion table and they are OK
>
>then: ga +meta --commit, and got NO ERRORS
>
>  <Core::Algorithm>
>    <description>GUS application framework for plugins</description>
>    <name>GA-Plugin</name>
>    <Core::AlgorithmImplementation>
>      <executable_md5>f9522ed43f9da502107387a274948971</executable_md5>
>      <executable>GUS::PluginMgr::GusApplication</executable>
>      <cvs_revision>2974</cvs_revision>
>      <Core::AlgorithmInvocation>
>        <result>meta</result>
>        <end_time>now()</end_time>
>        <start_time>now()</start_time>
>        <cpus_used>1</cpus_used>
>      </Core::AlgorithmInvocation>
>    </Core::AlgorithmImplementation>
>  </Core::Algorithm>
>  <Core::Algorithm>
>    <description>GUS application framework for plugins</description>
>    <name>GA-Plugin</name>
>    <modification_date>now()</modification_date>
>    <row_alg_invocation_id>1</row_alg_invocation_id>
>    <row_project_id>1</row_project_id>
>    <row_group_id>1</row_group_id>
>    <row_user_id>1</row_user_id>
>    <other_write>0</other_write>
>    <other_read>1</other_read>
>    <group_write>1</group_write>
>    <group_read>1</group_read>
>    <user_write>1</user_write>
>    <Core::AlgorithmImplementation>
>      <executable_md5>f9522ed43f9da502107387a274948971</executable_md5>
>      <executable>GUS::PluginMgr::GusApplication</executable>
>      <cvs_revision>2974</cvs_revision>
>      <modification_date>now()</modification_date>
>      <row_alg_invocation_id>1</row_alg_invocation_id>
>      <row_project_id>1</row_project_id>
>      <row_group_id>1</row_group_id>
>      <row_user_id>1</row_user_id>
>      <other_write>0</other_write>
>      <other_read>1</other_read>
>      <group_write>1</group_write>
>      <group_read>1</group_read>
>      <user_write>1</user_write>
>      <Core::AlgorithmInvocation>
>        <result>meta</result>
>        <modification_date>now()</modification_date>
>        <end_time>now()</end_time>
>        <start_time>now()</start_time>
>        <row_alg_invocation_id>1</row_alg_invocation_id>
>        <row_project_id>1</row_project_id>
>        <row_group_id>1</row_group_id>
>        <row_user_id>1</row_user_id>
>        <other_write>0</other_write>
>        <other_read>1</other_read>
>        <group_write>1</group_write>
>        <group_read>1</group_read>
>        <user_write>1</user_write>
>        <user_read>1</user_read>
>        <cpus_used>1</cpus_used>
>        <algorithm_implementation_id>2</algorithm_implementation_id>
>        <algorithm_invocation_id>2</algorithm_invocation_id>
>      </Core::AlgorithmInvocation>
>      <user_read>1</user_read>
>      <algorithm_id>2</algorithm_id>
>      <algorithm_implementation_id>2</algorithm_implementation_id>
>    </Core::AlgorithmImplementation>
>    <user_read>1</user_read>
>    <algorithm_id>2</algorithm_id>
>  </Core::Algorithm>
>
>
>I started registering the plugins UNFORTUNATELY I got only 2 correct
>and the next 5 with errors so I stopped to send this email, because maybe
>I need to follow some strict sequence???
>
>  ga +create GUS::Supported::Plugin::LoadTaxon --commit
>  Fri Oct 20 13:06:59 2006        INFO    Plugin
>  GUS::Supported::Plugin::LoadTaxon registered with cvs revision '2943'
>
>  ga +create GUS::Supported::Plugin::InsertExternalDatabase --commit
>  Fri Oct 20 13:13:59 2006        INFO    Plugin
>  GUS::Supported::Plugin::InsertExternalDatabase registered with cvs
>  revision '2942'
>
>ERRORS:
>  ========
>  ga +create GUS::Supported::Plugin::InsertSequenceFeatures.pm --commit
>  Warning: Use of "require" without parens is ambiguous at (eval 8) line 1.
>
>  Bareword "pm" not allowed while "strict subs" in use at (eval 8) line 1.
>  Bareword "GUS::Supported::Plugin::InsertSequenceFeatures" not allowed
>  while "strict subs" in use at (eval 8) line 1.
>  =======
>
>  ga +create GUS::Supported::Plugin::LoadRow.pm --commit
>  Warning: Use of "require" without parens is ambiguous at (eval 8) line 1.
>
>  Bareword "pm" not allowed while "strict subs" in use at (eval 8) line 1.
>  Bareword "GUS::Supported::Plugin::LoadRow" not allowed while "strict
>  subs" in use at (eval 8) line 1.
>  =======
>
>In the meantime I will continue registering the other plugins
>
>Thanks
>
>Michael
>
>
>  
>
>>michael-
>>
>>the 3.5 ga looks in the new table Core.DatabaseVersion in the version
>>column to find out what version of the schema you have.
>>
>>i don't know how that value is supposed to be set, but, you can set it
>>manually to 3.5
>>
>>steve
>>
>>mro...@cs... wrote:
>>
>>    
>>
>>>Hello GUS group,
>>>
>>>I need some help.
>>>
>>>I have been trying to use the ISF plugin in GUS, and to make a long story
>>>short, it appeared that we had a bad GUS 3.5 installed, so we
>>>re-installed, the SVN version of GUS 3.5.
>>>
>>>I am using postgres and the data that was there was erased. Now that I
>>>need to start new, I run the following:
>>>
>>>  ga +meta --commit
>>>
>>>and got:
>>>
>>>  Database version does not match required version for Plugin.
>>>  Database Version:     Plugin Version: 3.5
>>>
>>>
>>>I have looked all over the place in gus...@li...
>>>for an answer but no luck.
>>>
>>>
>>>Your help will be very much appreciated
>>>
>>>
>>>Michael
>>>
>>>
>>>
>>>-------------------------------------------------------------------------
>>>Using Tomcat but need to do more? Need to support web services, security?
>>>Get stuff done quickly with pre-integrated technology to make your job
>>>easier
>>>Download IBM WebSphere Application Server v.1.0.1 based on Apache
>>>Geronimo
>>>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
>>>_______________________________________________
>>>Gusdev-gusdev mailing list
>>>Gus...@li...
>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>>>
>>>
>>>      
>>>
>
>
>
>-------------------------------------------------------------------------
>Using Tomcat but need to do more? Need to support web services, security?
>Get stuff done quickly with pre-integrated technology to make your job easier
>Download IBM WebSphere Application Server v.1.0.1 based on Apache Geronimo
>http://sel.as-us.falkag.net/sel?cmd=lnk&kid=120709&bid=263057&dat=121642
>_______________________________________________
>Gusdev-gusdev mailing list
>Gus...@li...
>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>  
>