Re: [GUSDEV] Question regarding "InsertSequenceFeature"

[Kumar, S. <San...@ng...>]

Hi Steve,
   This date will be used to check whether the same genome sequence has
been updated by genBank or not.
   Here my understanding is that whenever genBank changes any old
genomsequence/or its annotations they=20
   change this date. And that comparision we will let me know whether I
need to reload the updated=20
   sequence or not.
   What do you think, is it a big change or small change?=20

Thanks
Sanjeev=20

-----Original Message-----
From: Steve Fischer [mailto:sfi...@pc...]=20
Sent: Tuesday, October 03, 2006 6:23 PM
To: Kumar, Sanjeev
Cc: gus...@li...
Subject: Re: [GUSDEV] Question regarding "InsertSequenceFeature"

ok, i guess it doesn't.  what is it that you are hoping to accomplish?

steve

Kumar, Sanjeev wrote:
> Hi Steve,
>    thanks for your reply. As you suggested I looked into the=20
> InsertSequenceFeatures.pm code,
>    and I found some commnets that says
>   # Annotations we haven't used yet
>   #	SEGMENT 	segment		SimpleValue e.g. " 1 of 2"
>   #   ORIGIN 	origin		SimpleValue e.g. " X Chromosome"
>   #   INV		date_changed	SimpleValue e.g. "08-JUL-1994"
>  Other than that I didn't see any where we are reading this
annotation.
> Does this mean that the plugin doesn't read it.
>
> Thanks
> Sanjeev
>
> -----Original Message-----
> From: sfi...@pc... [mailto:sfi...@pc...]
> Sent: Friday, September 29, 2006 6:21 PM
> To: Kumar, Sanjeev
> Cc: gus...@li...
> Subject: Re: [GUSDEV] Question regarding "InsertSequenceFeature"
>
> sanjeev-
>
> i believe it does.  take a look at the code in the plugin to see if=20
> you can find where it is parsing that line.
>
> steve
>
> Quoting "Kumar, Sanjeev" <San...@ng...>:
>
>  =20
>> Hi Group,
>>   I have a question regarding InsertSequenceFeature plugin.
>>   Following are the first few lines of NCBI genBank genome sequence
>> file:
>> *******************************
>>   LOCUS          AB255391                 978 bp    RNA     linear
>> VRL 22-JUN-2006
>>   DEFINITION     Influenza A virus (A/Aichi/17/2006(H1N1)) gene for
>> hemagglutinin,
>>                      partial cds.
>>   ACCESSION         AB255391
>>   VERSION       AB255391.1  GI:109452180
>>   KEYWORDS    .
>>   .
>>   .
>> *************************
>> My question is does the plugin parses and store the date shown in=20
>> first line above (22-JUN-2006).
>> I tried to look in various dbref table but no luck.
>>
>> Any help will be appreciated.
>>
>> Thanks
>> Sanjeev
>>
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>
>
>
>  =20