Re: [GUSDEV] Question regarding "InsertSequenceFeature"

[Kumar, S. <San...@ng...>]

Hi Steve,
   thanks for your reply. As you suggested I looked into the
InsertSequenceFeatures.pm code,
   and I found some commnets that says
  # Annotations we haven't used yet
  #	SEGMENT 	segment		SimpleValue e.g. " 1 of 2"
  #   ORIGIN 	origin		SimpleValue e.g. " X Chromosome"
  #   INV		date_changed	SimpleValue e.g. "08-JUL-1994"
 Other than that I didn't see any where we are reading this annotation.
Does this mean that the plugin doesn't read it.

Thanks
Sanjeev

-----Original Message-----
From: sfi...@pc... [mailto:sfi...@pc...]=20
Sent: Friday, September 29, 2006 6:21 PM
To: Kumar, Sanjeev
Cc: gus...@li...
Subject: Re: [GUSDEV] Question regarding "InsertSequenceFeature"

sanjeev-

i believe it does.  take a look at the code in the plugin to see if you
can find where it is parsing that line.

steve

Quoting "Kumar, Sanjeev" <San...@ng...>:

>
> Hi Group,
>   I have a question regarding InsertSequenceFeature plugin.
>   Following are the first few lines of NCBI genBank genome sequence
> file:
> *******************************
>   LOCUS          AB255391                 978 bp    RNA     linear
> VRL 22-JUN-2006
>   DEFINITION     Influenza A virus (A/Aichi/17/2006(H1N1)) gene for
> hemagglutinin,
>                      partial cds.
>   ACCESSION         AB255391
>   VERSION       AB255391.1  GI:109452180
>   KEYWORDS    .
>   .
>   .
> *************************
> My question is does the plugin parses and store the date shown in=20
> first line above (22-JUN-2006).
> I tried to look in various dbref table but no luck.
>
> Any help will be appreciated.
>
> Thanks
> Sanjeev
>
> ----------------------------------------------------------------------
> --- Take Surveys. Earn Cash. Influence the Future of IT Join=20
> SourceForge.net's Techsay panel and you'll get the chance to share=20
> your opinions on IT & business topics through brief surveys -- and=20
> earn cash=20
> =
http://www.techsay.com/default.php?page=3Djoin.php&p=3Dsourceforge&CID=3D=
DEV
> DEV _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>