Re: [GUSDEV] Gusdev-gusdev Digest, Vol 3, Issue 4

[<mro...@cs...>]

Good afternoon;

I am trying to run:

ga GUS::Supported::Plugin::InsertSequenceFeatures
--mapFile $HOME/"pseudomonas aeruginosa"/pa01/genbank2gus.xml
--inputFileOrDir $HOME/"pseudomonas aeruginosa"/pa01/NC_002516.gbk
--fileFormat genbank
--extDbName "Pseudomonas_aeruginosa"
--extDbRlsVer "06-16-2006"
--soCvsVersion "1.41"
--commit

and I get the following error:

 The plugin has an illegal cvs revision: '$Revision$'.
 If that doesn't include a revision number, then the plugin has never bee=
n
 checked into CVS.
 Please do so to give it an intial revision at
 /home/acrl-storage-1/gusdb/GUS/gus_home/lib/perl/GUS/PluginMgr/Plugin.pm
 line 347.
 Database handle destroyed without explicit disconnect.


Line 347 of Plugin.pm has the following code:

 $self->{cvsRevision} =3D~ /Revision:\s+(\S+)\s+/ || die "The plugin has =
an
 illegal cvs revision: '$self->{cvsRevision}'.  If that doesn't include a
 revision number, then the plugin has never been checked into CVS.  Pleas=
e
 do so to give it an intial revision";
  return $1;


I have been searching the "archive emails" but I have not been able to
find how to "check the plugin into CVS".


Any help will very much appreciated.


Michael Robinson
Bioinformatics Research Group (Biorg)
Florida International University
Miami, Florida, USA 33199