Menu
▾
▴
Re: [GUSDEV] Description of tables - documentation
|
From: Chris S. <sto...@pc...> - 2006-08-18 19:04:27
|
Since Steve answered the others ... >> 4- Table NALocation >> LOC_ORDER A feature (e.g., RNA, Gene) can have multiple locations on a sequence (e.g., contig, virtual sequence). This tells you the order of those multiple locations although it may be inferred from the starts and ends. >> IS_EXCLUDED don't remember offhand .. >> DB_NAME >> DB_IDENTIFIER probably should be database_release_id and source_id >> LITERAL_SEQUENCE again don't really remember but think it may be for helping specify the sequence the location marks by literally providing it >> REMARK comment field >> >> DEBUG_FIELD I'm guessing another type of comment field Chris On Aug 18, 2006, at 9:47 AM, Steve Fischer wrote: > ok, see below > > Ana Carol wrote: >> Hello all! >> >> I need to know the description/definition of some terms that don't >> have in >> gus schema browser. >> Can you help me??? >> 1- Table NASequence >> SEQUENCE_PIECE_ID >> > this is a foreign key to the SequencePiece view. this is used to tie > together pieces of sequence into a virtual sequence. the real-world > application is to model scaffolds. >> 2- Table Similarity >> BIT_SCORE_SUMMARY >> > this is designed to hold the bit score summary provided in a BLAST > result. it summarizes all the bit scores of the individual HSPs >> 3- Table SimilaritySpan >> BIT_SCORE >> > a bit score of a BLAST HSP >> 4- Table NALocation >> LOC_ORDER >> IS_EXCLUDED >> DB_NAME >> DB_IDENTIFIER >> LITERAL_SEQUENCE >> REMARK >> DEBUG_FIELD >> > i don't know.... i say ignore these, if you can. >> 5- Table NAProtein/NAGene >> IS_VERIFIED >> > this is set to 1 if a curator has reviewed the protein or gene >> I need this to put in my final dissertation of master's degree and >> i don't >> know biology very well, but I studied GUS more or less... >> >> Thanks in advance, >> Ana Carolina >> >> >> >> --------------------------------------------------------------------- >> --- >> >> --------------------------------------------------------------------- >> ---- >> Using Tomcat but need to do more? Need to support web services, >> security? >> Get stuff done quickly with pre-integrated technology to make your >> job easier >> Download IBM WebSphere Application Server v.1.0.1 based on Apache >> Geronimo >> http://sel.as-us.falkag.net/sel? >> cmd=lnk&kid=120709&bid=263057&dat=121642 >> --------------------------------------------------------------------- >> --- >> >> _______________________________________________ >> Gusdev-gusdev mailing list >> Gus...@li... >> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >> > > ---------------------------------------------------------------------- > --- > Using Tomcat but need to do more? Need to support web services, > security? > Get stuff done quickly with pre-integrated technology to make your > job easier > Download IBM WebSphere Application Server v.1.0.1 based on Apache > Geronimo > http://sel.as-us.falkag.net/sel? > cmd=lnk&kid=120709&bid=263057&dat=121642 > _______________________________________________ > Gusdev-gusdev mailing list > Gus...@li... > https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev |
