Re: [GUSDEV] Description of tables - documentation

[Steve F. <sfi...@pc...>]

ok, see below

Ana Carol wrote:
> Hello all! 
>
> I need to know the description/definition of some terms that don't have in 
> gus schema browser. 
> Can you help me??? 
> 1- Table NASequence 
> SEQUENCE_PIECE_ID 
>   
this is a foreign key to the SequencePiece view.  this is used to tie 
together pieces of sequence into a virtual sequence.  the real-world 
application is to model scaffolds.
> 2- Table Similarity 
> BIT_SCORE_SUMMARY 
>   
this is designed to hold the bit score summary provided in a BLAST 
result.  it summarizes all the bit scores of the individual HSPs
> 3- Table SimilaritySpan 
> BIT_SCORE 
>   
a bit score of a BLAST HSP
> 4- Table NALocation 
> LOC_ORDER 
> IS_EXCLUDED 
> DB_NAME 
> DB_IDENTIFIER 
> LITERAL_SEQUENCE 
> REMARK 
> DEBUG_FIELD 
>   
i don't know....  i say ignore these, if you can. 
> 5- Table NAProtein/NAGene 
> IS_VERIFIED 
>   
this is set to 1 if a curator has reviewed the protein or gene
> I need this to put in my final dissertation of master's degree and i don't 
> know biology very well, but I studied GUS more or less... 
>
> Thanks in advance, 
> Ana Carolina 
>
>
>   
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