Re: [GUSDEV] Blast Similarities

[Steve F. <sfi...@pc...>]

where did this script come from?   i don't see it in the gus source tree.

the problem is that the your PERL path doesn't include CBIL/lib/perl/Blast/

steve

Adhemar Zerlotini Neto wrote:

> I'm trying to upload some blast results following a manual created by 
> Pablo, who works at Jessica's Lab. at UGA.
>
> The problem is that the perl script 'parseBlastFilesForSimilarity.pl' 
> isn't working.
>
> Here is the error:
>
> perl parseBlastFilesForSimilarity.pl --regex='(\S+)'
> --outputFile=/home/japonicum/JaponicumDB/PROJECTS_INFO/BLAST/SJest.VS.SJcontigs/SJest.VS.SJcontigs.PARSED 
> --dir=/home/japonicum/JaponicumDB/PROJECTS_INFO/BLAST/SJest.VS.SJcontigs/SJest.VS.SJcontigs.RESULTS 
> Opening
> /home/japonicum/JaponicumDB/PROJECTS_INFO/BLAST/SJest.VS.SJcontigs/SJest.VS.SJcontigs.PARSED 
> /home/japonicum/JaponicumDB/PROJECTS_INFO/BLAST/SJest.VS.SJcontigs/SJest.VS.SJcontigs.PARSED 
> is open
> Cutoff parameters:
> P value: 1e-05
> Length: 10
> Percent Identity: 20
>
>
> Analyzing
> opening
> /home/japonicum/JaponicumDB/PROJECTS_INFO/BLAST/SJest.VS.SJcontigs/SJest.VS.SJcontigs.PARSED 
> Can't locate object method "new" via package "Blast::BlastAnal" 
> (perhaps you forgot to load "Blast::BlastAnal"?) at
> parseBlastFilesForSimilarity.pl line 81.
>
>
> I would like to know how to fix this script or to download a new 
> version of the blast parse scripts.
>
> Thanks,
>
> Ad.
>
>
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