Re: [GUSDEV] PDB Format

[Chris S. <sto...@pc...>]

Hi Adhemer,
We don't have a mechanism for storing (protein) structures in GUS. =20
For PlasmoDB as you noted we are just storing links.
My thoughts are that you might start with a separate schema to =20
capture structure as works best for you and then once you are happy =20
with it propose it as a new schema namespace for GUS.

Cheers,
Chris

Chris Stoeckert, Ph.D.
Research Associate Professor, Dept. of Genetics
1415 Blockley Hall, Center for Bioinformatics
423 Guardian Dr., University of Pennsylvania
Philadelphia, PA 19104
Ph: 215-573-4409 FAX: 215-573-3111

On Jun 2, 2006, at 8:36 AM, Adhemar Zerlotini Neto wrote:

> Hello,
> I would like to know how to store new protein structures (.pdb =20
> format) in the GUS database.
> I saw that this information is being published in PlasmoDB, for =20
> example, but the protein structures are already submitted to the =20
> PDB. In our case, the structures weren't submitted yet and we would =20=

> like to show them through a viewer, like Cn3D.
> I=B4m looking forward to hearing from you.
> Thank you,
> Adhemar
>
>
> Adhemar Zerlotini Neto
> Schistosoma mansoni Database Project
> Centro de Pesquisas Ren=E9 Rachou - FIOCRUZ
> Av. Augusto de Lima 1715
> BH MG 30190-002, Brazil
> Phone: +55-31-3349-7798
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