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Re: [GUSDEV] Build issue
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From: Steve F. <sfi...@pc...> - 2006-05-02 19:08:07
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have you checked the permissions on the core.algorithm table?
steve
John F Flynn III wrote:
> Hmmm. Is there a way to make the build process more verbose so that I
> can find out what exactly is failing?
>
> As far as I can tell, everything seems successful up to the point
> where those compilation failures occur.
>
> -John
>
> Steve Fischer wrote:
>
>> john-
>>
>> as you might know gus provides a perl and a java object layer. each
>> gus table is represented by a perl object and by a java object.
>>
>> part of the intall process is a code-generation step that generates 3
>> perl files and 3 java files per gus table.
>>
>> then, after that, the install compiles the generated java files.
>>
>> this compile error is during that compile.
>>
>> it means that the code generation step didn't work right. in
>> particular, what happened is that the code generator did not
>> successfully get info from postgresql on what the type of the
>> Core.Algorithm column is.
>>
>> i'm not certain, but, i think this is brought about when you have a
>> correct list of all the gus tables and views is core.tableinfo (which
>> is where the code-generator looks to find out what tables exist),
>> but, that the actual tables are not accessible to the code
>> generator. this sometimes happens because of permissions. so, you
>> need to make sure that Core.Algorithm is defined and accessible.
>>
>> steve
>>
>> John F Flynn III wrote:
>>
>>> Hiya folks! This is John Flynn from the Florida International
>>> University School of Computer Science. We are trying to build GUSdb
>>> and are running into issues.
>>>
>>> Apologies if anyone sees this twice, but I opened a bugzilla bug and
>>> no one has responded, so I'm assuming no one is listening over
>>> there. Hopefully someone here can help us.
>>>
>>> I read the list through archives, so if anyone responds, please CC
>>> me as well as the list so I see the message sooner. Thanks!
>>>
>>> Basically, the GUS build process fails with numerous compilation
>>> errors.
>>>
>>>
>>> I ensured all the requirements were met, set up the database, and
>>> set up the configuration file as follows:
>>>
>>> ==begin configuration file snippet==
>>> dbVendor=Postgres
>>> dbiDsn=dbi:Pg:dbname=gusdb;host=localhost
>>> jdbcDsn=jdbc:postgresql://localhost/gusdb
>>>
>>> # Login and Password to the RDBMS
>>>
>>> databaseLogin=gusdb
>>> databasePassword=<password here>
>>>
>>> # Username, group, and project info from the relevant Core tables
>>>
>>> userName=dba
>>> group=dba
>>> project=Database administration
>>>
>>> tablespace=GUS
>>> ==End configuration file snippet==
>>>
>>> Relevant software versions follow:
>>>
>>> CentOS 4.3
>>> J2SE 1.5
>>> Ant 1.6.5
>>> Postgresql 7.4
>>> Perl 5.8.5 with required modules
>>>
>>> Error output follows:
>>>
>>>
>>> [echo] Installing GUS/Model
>>> [javac] Compiling 1260 source files to
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/classes
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:78:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>>> [javac] public void setModificationDate (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/Algorithm_Row.java:83:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.Algorithm_Row
>>> [javac] public notdefyet getModificationDate () { return
>>> (notdefyet)get_Attribute("modification_date"); }
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:78:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>>> [javac] public void setModificationDate (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/ProjectInfo_Row.java:83:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class org.gusdb.model.Core.ProjectInfo_Row
>>> [javac] public notdefyet getModificationDate () { return
>>> (notdefyet)get_Attribute("modification_date"); }
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:54:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class
>>> org.gusdb.model.Core.AlgorithmInvocation_Row
>>> [javac] public void setStartTime (notdefyet value)
>>> [javac] ^
>>> [javac]
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/Model/src/java/org/gusdb/model/Core/AlgorithmInvocation_Row.java:59:
>>>
>>> cannot find symbol
>>> [javac] symbol : class notdefyet
>>> [javac] location: class
>>> org.gusdb.model.Core.AlgorithmInvocation_Row
>>> [javac] public notdefyet getStartTime () { return
>>> (notdefyet)get_Attribute("start_time"); }
>>> [javac] ^
>>> ....snipped; this goes on with similar errors for many pages...
>>> [javac] ^
>>> [javac] Note: Some input files use unchecked or unsafe operations.
>>> [javac] Note: Recompile with -Xlint:unchecked for details.
>>> [javac] 100 errors
>>>
>>> BUILD FAILED
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:28:
>>> The following
>>> error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/GUS/build.xml:99: The
>>> following
>>> error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:259: The
>>> following error occurred while executing this line:
>>> /home/acrl-storage-1/gusdb/GUS/project_home/install/build.xml:278:
>>> Compile
>>> failed; see the compiler error output for details.
>>>
>>> Total time: 18 seconds
>>>
>
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