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From: Aaron J. M. <am...@pc...> - 2006-03-14 15:46:12
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FYI, the subject start/end coordinates of the SUM line seem to be
fubar'ed in the short-form output (and the HSP lines are also
suspect). For instance:
Sum: 995361:1777:2.1e-193:506993:506973:2:696:2:734:369:514:0:
HSP1: 995361:336:463:645:1777:2.1e-193:508907:506973:2:639:0:
HSP2: 995361:33:51:89:148:2.1e-193:506993:506727:610:696:0:
I believe this should instead look something like:
Sum: 995361:1777:2.1e-193:506727:508907:2:696:2:734:369:514:1:
HSP1: 995361:336:463:645:1777:2.1e-193:506973:508907:2:639:1:
HSP2: 995361:33:51:89:148:2.1e-193:506727:506993:610:696:1:
I've only seen this in TBLASTN output, but there may be other
algorithms that also behave poorly.
-Aaron
--
Aaron J. Mackey, Ph.D.
Project Manager, ApiDB Bioinformatics Resource Center
Penn Genomics Institute, University of Pennsylvania
email: am...@pc...
office: 215-898-1205 (Biology, 212 Goddard Labs)
215-746-7018 (PCBI, 1428 Blockley Hall)
fax: 215-746-6697 (Penn Genomics Institute)
postal: Penn Genomics Institute
Goddard Labs 212
415 S. University Avenue
Philadelphia, PA 19104-6017
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