Re: [GUSDEV] Alternative to StudyAnnotator

[Elisabetta M. <man...@pc...>]

No, currently there is no such alternative or at least no alternative 
that we have developed at CBIL, as the RADSA is working very well for us.
Please see http://www.cbil.upenn.edu/RAD/php/RAD-installation.php?, bullet 
point 2 for data loading pipeline into RAD.
In some special cases (like data coming out of particular software), some 
of the annotation can be automated via plugins that we provide (precisely 
the Assay to Quantification or "Module I"), as these particular software 
packages provide files that can be used to automate part of the process.
For other parts, like Module II (annotation about experimental design) and 
Module III (annotation like biomaterials and protocols), since the info 
doesn't typically resides in files, but it's in the lab notebook of the 
person who did the bench work, the Study Annotator provides a suite of 
webforms to facilitate entering this info. 
Elisabetta

---

On Wed, 16 Nov 2005, Amruta Joshi wrote:

>
> Is there any alternative software that does the job similar to the
> StudyAnnotator (viz. interface for annotating and depositing microarray
> data into GUS)?
>
> thanks,
> Amruta
>
>
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