[GUSDEV] Re: ISO error

[Trish W. <wh...@pc...>]

Hi Henrique,

Actually, the InsertSequenceOntology file uses the SequenceOntology.obo 
file as the input.  I believe there is another plugin that loads the GO 
module of tables.  The file can be obtained from:
http://cvs.sourceforge.net/viewcvs.py/*checkout*/song/ontology/so.obo?rev=1.35

Trish

> Thanks for the attention. Steve's suggestion solved my problem. Sorry
> about that resumed error I printed, I'll paste the whole message next
> time. Now, I'm facing a problem w/ InsertSequenceOntology.  We're
> using Postgres here, and when I tried to upload GO.defs (is that the
> right file? - i checked so.definitions and it seems to have just
> changed its name), and I received this message:
>
> [juca1@kineto3 GUS]$ ga GUS::Supported::Plugin::InsertSequenceOntology
> --inputFile /gus/GUS-Files/GO/GO.defs --soCvsVersion '1.419'
> --soVersion '3.3.48' --user juca --group TESTE --commit
> Wed Oct 26 15:01:05 2005        ARGS    algoinvo        1
> Wed Oct 26 15:01:05 2005        ARGS    comment
> Wed Oct 26 15:01:05 2005        ARGS    commit  1
> Wed Oct 26 15:01:05 2005        ARGS    debug   0
> Wed Oct 26 15:01:05 2005        ARGS    group   TESTE
> Wed Oct 26 15:01:05 2005        ARGS    gusconfigfile   /gus/GUS/gus.proper=
> ties
> Wed Oct 26 15:01:05 2005        ARGS    help
> Wed Oct 26 15:01:05 2005        ARGS    helpHTML
> Wed Oct 26 15:01:05 2005        ARGS    inputFile     =20
> /gus/GUS-Files/GO/GO.defs
> Wed Oct 26 15:01:05 2005        ARGS    project
> Wed Oct 26 15:01:05 2005        ARGS    soCvsVersion    1.419
> Wed Oct 26 15:01:05 2005        ARGS    soVersion       3.3.48
> Wed Oct 26 15:01:05 2005        ARGS    sqlVerbose      0
> Wed Oct 26 15:01:05 2005        ARGS    user    juca
> Wed Oct 26 15:01:05 2005        ARGS    verbose 0
> Wed Oct 26 15:01:05 2005        ARGS    veryVerbose     0
> Wed Oct 26 15:01:05 2005        COMMIT  commit on
> Wed Oct 26 15:01:05 2005        ALGINVID        10