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From: Weichen W. <we...@se...> - 2005-10-24 20:41:00
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In program BioperlFeatMapper.pm, there is a line
use XML::Simple;
I think the Simple.pm is the one from Bioperl package. Since in Bioperl,
the Simple.pm is under directory Bio/Location/ rather than XML/, I made a
sub-directory XML in gus_home/lib/perl/ and copy the Simple.pm to the XML
sub-directory. Is it right?
That I ask this is because I have compilation error when run Insert
SequenceFeatures.pm
[wewu@noodle import_ipi_zebrafish]$ ga
GUS::Supported::Plugin::InsertSequenceFeatures --mapFile
genbank2gus.xml --inputFileOrDir embl.dat --fileFormat EMBL --extDbName
embl --extDbRlsVer 2.2
ERROR:
Can't locate object method "new" via package "XML::Simple" (perhaps you
forgot to load "XML::Simple"?) at
/home/wewu/work/6_gus/gus_home/lib/perl/GUS/Supported/BioperlFeatMapperSet.pm
line 67.
STACK TRACE:
at
/home/wewu/work/6_gus/gus_home/lib/perl/GUS/Supported/BioperlFeatMapperSet.pm
line 67
GUS::Supported::BioperlFeatMapperSet::_parseMapFile('GUS::Supported::BioperlFeatMapperSet=HASH(0x1e08420)',
'ipi2gus.xml',
Thanks,
Weichen
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