From: Weichen W. <we...@se...> - 2005-10-24 20:41:00
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In program BioperlFeatMapper.pm, there is a line use XML::Simple; I think the Simple.pm is the one from Bioperl package. Since in Bioperl, the Simple.pm is under directory Bio/Location/ rather than XML/, I made a sub-directory XML in gus_home/lib/perl/ and copy the Simple.pm to the XML sub-directory. Is it right? That I ask this is because I have compilation error when run Insert SequenceFeatures.pm [wewu@noodle import_ipi_zebrafish]$ ga GUS::Supported::Plugin::InsertSequenceFeatures --mapFile genbank2gus.xml --inputFileOrDir embl.dat --fileFormat EMBL --extDbName embl --extDbRlsVer 2.2 ERROR: Can't locate object method "new" via package "XML::Simple" (perhaps you forgot to load "XML::Simple"?) at /home/wewu/work/6_gus/gus_home/lib/perl/GUS/Supported/BioperlFeatMapperSet.pm line 67. STACK TRACE: at /home/wewu/work/6_gus/gus_home/lib/perl/GUS/Supported/BioperlFeatMapperSet.pm line 67 GUS::Supported::BioperlFeatMapperSet::_parseMapFile('GUS::Supported::BioperlFeatMapperSet=HASH(0x1e08420)', 'ipi2gus.xml', Thanks, Weichen |