Re: [GUSDEV] question about coding in LoadSequenceFeatures.pm

[Angel P. <an...@ma...>]

Actually, I don't think so, since the AAFeature and NAFeature tables 
differ in a few respects. With respect to ExternalAASequence you may be 
OK, but I think you will run into problems if you try to add any features.

As a side note, why are the AAFeature and NAFeature tables different? I 
don't see any documentation using the schema browser on any of the AASeq 
or AAFeat table columns, so I can't make a good assesment as to what is 
needed when. Is NAFeature going to move to the feature_name_id FK to 
DoTS::FeatureName (as opposed to a string column) scheme like AAFeature 
at any point?

Thanks,
Angel


Steve Fischer wrote:

> yes.
>
> -steve
>
> Weichen Wu wrote:
>
>> My question is about submit() method. In LoadSequenceFeatures.pm, 
>> there is one line
>>    $naSequence->submit();
>> Does the submit method do the actual insertion into the 
>> ExternalNASequence table?
>>
>> If I change variable $nasequence to $AAsequence, declare it as
>> $aaSequence = GUS::Model::DoTS::ExternalAASequence( ), then set up 
>> $aaSequence->sequenceID and taxonid and etc, finally run
>> $aaSequence->submit();
>> Will it insert a record to ExternalAASequence( )?
>>
>> Thanks,
>> Weichen
>>
>>
>>
>>
>>
>>
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Angel Pizarro
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