Re: [GUSDEV] mapping file

[Weichen W. <we...@se...>]

Where can I find more document about mapping file or 
reportFeatureQualifiers? I will create a mapping file.

Thanks,
Weichen

----- Original Message ----- 
From: "Steve Fischer" <sfi...@pc...>
To: "Weichen Wu" <we...@se...>
Cc: <gus...@li...>
Sent: Saturday, October 08, 2005 7:29 AM
Subject: Re: [GUSDEV] mapping file


> yes, the mapping file is required.  you can use the genbank2gus.xml file 
> if your embl file uses features and qualifiers that conform to the 
> genbank/embl/ddbj feature table (see 
> http://www.ncbi.nlm.nih.gov/collab/FT/).
> but, you must understand that input often does not conform, or, places 
> data into qualifiers in the wrong way.
>
> in this case, you will need to provide your own mapping file.
>
> here is a snip from the documentation from the plugin (i just improved the 
> doc in latest plugin version):
>
> --------
> Another way to generate a template mapping file is by using the command 
> reportFeatureQualifiers.  This command analyzes a set of input files, and 
> reports the feature/qualifier structure found in them.  It can output the 
> report in simple text form, or in XML that is a template for the mapping 
> file.
> --------
>
> steve
>
> Weichen Wu wrote:
>
>> Hi,
>>
>> To use InsertSequenceFeatures plugin, is the mapping file is required? 
>> There is a genebank2gus.xml. Is there a mapping file for EMBL format 
>> available?
>>
>> Thanks,
>> Weichen
>>
>>
>>
>>
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