Re: [GUSDEV] mapping file

[Steve F. <sfi...@pc...>]

yes, the mapping file is required.  you can use the genbank2gus.xml file 
if your embl file uses features and qualifiers that conform to the 
genbank/embl/ddbj feature table (see  
http://www.ncbi.nlm.nih.gov/collab/FT/). 

but, you must understand that input often does not conform, or, places 
data into qualifiers in the wrong way.

in this case, you will need to provide your own mapping file.

here is a snip from the documentation from the plugin (i just improved 
the doc in latest plugin version):

--------
Another way to generate a template mapping file is by using the command 
reportFeatureQualifiers.  This command analyzes a set of input files, 
and reports the feature/qualifier structure found in them.  It can 
output the report in simple text form, or in XML that is a template for 
the mapping file.
--------

steve

Weichen Wu wrote:

> Hi,
>
> To use InsertSequenceFeatures plugin, is the mapping file is required? 
> There is a genebank2gus.xml. Is there a mapping file for EMBL format 
> available?
>
> Thanks,
> Weichen
>
>
>
>
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