[GUSDEV] schema documentation ( and the plugins), revisited

[Josef J. <ju...@cs...>]

Steve Fischer <sfi...@pc...> writes:
>
> there isn't any parallel document for AAFeatureImp as of yet, that i
> know of.


Then let's start one.  First we need a mapping of
genbank features to gus tables.  Here is the list of
aa feature names from the genbank files I am presently
working with:

  Bond
  CDS
  gene            DoTS::AAGene (** see below)
  Het
  mat_peptide
  proprotein
  Protein
  Region
  SecStr          DoTS::SecondaryStructureAAFeature
  sig_peptide     DoTS::SignalPeptideFeature
  Site
  source          (I assume we don't bother to put this one in a featuretable).

The right side is my guess as to what view on AAFeature that
this particular feature uses.  Ok, I did not get very far.

Can someone help me by filling in the rest?

Also, is the following a complete list of views on DoTS.AAFeatureImp?:

    DoTS::AAFeature
    DoTS::AASeqVariation
    DoTS::DomainFeature
    DoTS::EpitopeFeature
    DoTS::LowComplexityAAFeature
    DoTS::MassSpecFeature
    DoTS::PlasmoAPFeature
    DoTS::PostTranslationalModFeature
    DoTS::PredictedAAFeature
    DoTS::RepeatRegionAAFeature
    DoTS::SecondaryStructureAAFeature
    DoTS::SignalPeptideFeature
    DoTS::TertiaryStructureAAFeature
    DoTS::TranslatedAAFeature

Thank you for your help!

Josef

** Why is DoTS.GeneFeature a view on DoTS.NAFeatureImp though
DoTS.AAGene not a view on DoTS.AAFeature?

Thanks again.