[GUSDEV] Using InsertSequenceFeatures

[<fab...@de...>]

Hello,

We're now trying to use the new plugin InsertSequenceFeatures. We were tr=
ying to
load c.hom.gb with it, but an error ocurred.

The command:


ga GUS::Supported::Plugin::InsertSequenceFeatures --mapFile
/usr/local/GUS/gus_home/config/genbank2gus.xml --seqFile c.hom.gb --fileF=
ormat
'genbank' --extDbName 'genbank' --extDbRlsVer 'unknown' --soCvsVersion '1=
.42'

And error:

ERROR:  null value in column "aa_sequence_id" violates not-null constrain=
t
DBD::Pg::st execute failed: ERROR:  null value in column "aa_sequence_id"
violates not-null constraint at
/usr/local/GUS/gus_home/lib/perl/GUS/ObjRelP/DbiDbHandle.pm line 147, <GE=
N12>
line 2179.

So, we tryed to load a nucleotide genbank and the error changes:

ga GUS::Supported::Plugin::InsertSequenceFeatures --mapFile
/usr/local/GUS/gus_home/config/genbank2gus.xml --seqFile c.hom.gb --fileF=
ormat
'genbank' --extDbName 'genbank' --extDbRlsVer 'unknown' --soCvsVersion '1=
.42'

And the error was:

ERROR:
Can't locate object method "geneNameIds" via package
"GUS::Supported::Plugin::InsertSequenceFeatures" at
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeatu=
res.pm
line 886, <GEN12> line 58.


I saw in the InsertSequenceFeatures.pm that the function "geneNameIds" is=
n't
defined. It's been used but the function doesn't exist. Is it ok?

Thanks a lot,

Fabricio.

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