[GUSDEV] Re: Creating new Schema rules and views

[<hen...@gm...>]

Hi Steve,


I tried uploading the file you provided in your email (at least part of it)=
,=20
and I got the following error:
(this WARNING repeats several times)

---------------------------------------------------

-------------------- WARNING ---------------------
MSG: Unexpected error in feature table for Skipping feature, attempting to=
=20
recover
---------------------------------------------------

-------------------- WARNING ---------------------
MSG: Unexpected error in feature table for Skipping feature, attempting to=
=20
recover
---------------------------------------------------

ERROR:
Can't call method "genus" on an undefined value at=20
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeature=
s.pm=20
line 812, <GEN29> line 1473.

STACK TRACE:
at=20
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeature=
s.pm=20
line 812
GUS::Supported::Plugin::InsertSequenceFeatures::getTaxonId('GUS::Supported:=
:Plugin::InsertSequenceFeatures=3DHASH(0x87071b0)',
'Bio::Seq::RichSeq=3DHASH(0x9414818)') called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeature=
s.pm=20
line 587
GUS::Supported::Plugin::InsertSequenceFeatures::constructNASequence('GUS::S=
upported::Plugin::InsertSequenceFeatures=3DHASH(0x87071b0)',
'Bio::Seq::RichSeq=3DHASH(0x9414818)', 3734) called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeature=
s.pm=20
line 547
GUS::Supported::Plugin::InsertSequenceFeatures::bioperl2NASequence('GUS::Su=
pported::Plugin::InsertSequenceFeatures=3DHASH(0x87071b0)',
'Bio::Seq::RichSeq=3DHASH(0x9414818)') called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin/InsertSequenceFeature=
s.pm=20
line 348
GUS::Supported::Plugin::InsertSequenceFeatures::run('GUS::Supported::Plugin=
::InsertSequenceFeatures=3DHASH(0x87071b0)',
'HASH(0x91cf374)') called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 469
eval {...} called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 461
GUS::PluginMgr::GusApplication::doMajorMode_RunOrReport('GUS::PluginMgr::Gu=
sApplication=3DHASH(0x81bac20)',
'GUS::Supported::Plugin::InsertSequenceFeatures', 1) called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 380
GUS::PluginMgr::GusApplication::doMajorMode_Run('GUS::PluginMgr::GusApplica=
tion=3DHASH(0x81bac20)',
'GUS::Supported::Plugin::InsertSequenceFeatures') called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 288
GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=
=3DHASH(0x81bac20)',
'GUS::Supported::Plugin::InsertSequenceFeatures') called at=20
/usr/local/GUS/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 197
GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=
=3DHASH(0x81bac20)',
'ARRAY(0x81ce520)') called at /usr/local/GUS/gus_home/bin/ga line 1


When I did the build, as you instructed, I did not recreate the schema.=20
Should I do that?


Thanks,


Henrique Cesar Lemos Juc=E1 - http://www.bioinformatica.ufsc.br

"As soon as you concern yourself with the "good" and "bad" of your fellows,=
=20
you create an opening in your heart for maliciousness to enter. Testing,=20
competing with, and criticizing others weaken and defeat you."

Morihei Ueshiba, O-Sensei (1883-1969)