RE: [GUSDEV] Issue in running new Plugin

[Kumar, S. \(Contr\) <San...@ng...>]

Hi Steve,
   What is the status of the below mention Plugin?
   Can we have some kind of release time line for the same?
   I am not able to utilize the GUS3.5 because we don't have any kind of
parser to parser=20
   GenBank genome sequence file.=20
  =20

Thanks
Sanjeev =20

-----Original Message-----
From: Steve Fischer [mailto:sfi...@pc...]=20
Sent: Friday, August 12, 2005 12:08 PM
To: Kumar, Sanjeev (Contr)
Cc: Chris Stoeckert; Michael Saffitz
Subject: Re: [GUSDEV] Issue in running new Plugin

sanjeev-

you'll have to work with ed on that.  he has given you a pre-release=20
version.   i am working (starting today) to complete the testing of the=20
supported plugin, which is
GUS::Supported::Plugin::InsertSequenceFeatures.

i hope to have it done in a couple of days.

steve

Kumar, Sanjeev (Contr) wrote:

>Hi Chris,
>   Thanks for checking.I think all issues raised by me earlier are=20
>resolved. I am working
>   on writing Plugin to load Prosite data.
>   I have a question regarding the new GBParser development status.
>   Although I got this new GBParser for testing with GUS3.5 from ED=20
>Robinson.
>   It is not loading any sequence data, but I see some insert sql=20
>generated for CORE
>   schema tables.
>   Steve, can you help me in this.
>  =20
>Thanks
>Sanjeev
>
>-----Original Message-----
>From: Chris Stoeckert [mailto:sto...@pc...]
>Sent: Wednesday, August 10, 2005 4:57 PM
>To: Kumar, Sanjeev (Contr)
>Cc: Steve Fischer; Michael Saffitz
>Subject: Re: [GUSDEV] Issue in running new Plugin
>
>Hi Sanjeev,
>Steve thinks this was a permission problem. Mike has granted you=20
>permission now with your Wiki username and password so please try
again.
>Are you Ok with the other issues you raised?
>Cheers,
>Chris
>
>On Aug 5, 2005, at 10:41 AM, Kumar, Sanjeev (Contr) wrote:
>
> =20
>
>>Hi,
>>  I am having issue in running newly registered plugin.
>>  I have one new plug in which I registered and I tested it , it ran=20
>>fine.
>>  AFter that I fixed some bug and then tried to run it gave me error=20
>>saying that plugin has change I need to update it. But when I am=20
>>trying to update the plug in it is not letting me do so. Errors are=20
>>listed below :
>>***************************************
>>[oragus35@rdevse02 oragus35]$ ga GUS::Supported::Plugin::LoadPrositeDB
>>--file /home/oragus35/prosite.dat --commit
>>
>>USER ERROR: The md5 checksum of
>>GUS::Supported::Plugin::LoadPrositeDB's
>>executable file (cvs revision 2943) doesn't match the md5 checksum in=20
>>the database for that plugin and revision. IE, the plugin has been=20
>>changed but not commited and updated.  Please:
>>                   - cvs commit the plugin file
>>                   - use the build system to install it
>>                   - run 'ga +update
>>GUS::Supported::Plugin::LoadPrositeDB --commit'
>>Aborting
>>Issuing rollback() for database handle being DESTROY'd without=20
>>explicit disconnect().
>>Issuing rollback() for database handle being DESTROY'd without=20
>>explicit disconnect().
>>[oragus35@rdevse02 oragus35]$ ga +update=20
>>GUS::Supported::Plugin::LoadPrositeDB --commit;
>>Error:   GUS::Supported::Plugin::LoadPrositeDB with CVS revision =20
>>2943 is
>>already registered.  You don't need to do a +update.
>>
>>******************************************************************
>>Pl. suggest me what needs to be done.
>>
>>Thanks
>>Sanjeev
>>
>>
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>>   =20
>>
>
> =20
>