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[GUSDEV] Build
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From: Adhemar Z. N. <ad...@cp...> - 2005-08-23 20:13:18
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<br />Hi Everybody,<br /><br />I=B4m a newbie using GUS. I=B4m trying to
install the 3.5 version on Oracle 10g and I=B4m having some problems with
the build script.<br /><br />I tried to use the build script serveral
times from the scratch. Here is the output of the last try:<br /><br
/><font size=3D"1" style=3D"font-family: courier new,courier,monospace;">=
<font
size=3D"1">[oracle@gus install]$<br />build GUS install -append
-installDBSchema<br /> [mkdir] Created dir:<br
/>/usr/local/GUS/project_home/install/classes<br /> [javac] Compiling
1<br />source file to /usr/local/GUS/project_home/install/classes<br
/>[WritePropertyFiles] Aug 23, 2005 9:37:09 AM<br
/>org.gusdb.install.WritePropertyFileTask initialize<br
/>[WritePropertyFiles] INFO: Creating configuration directory<br /> <b=
r
/>[copy] Copying 1 file to /usr/local/GUS/gus_home/config<br /> =20
[copy]<br />Copying 1 file to /usr/local/GUS/gus_home/config<br /> =20
[echo] .<br /> [echo] Installing CBIL/Bio<br /> [mkdir] Created
dir:<br />/usr/local/GUS/gus_home/bin<br /> [copy] Copying 5 files
to<br />/usr/local/GUS/gus_home/bin<br /> [mkdir] Created dir:<br
/>/usr/local/GUS/gus_home/lib/perl/CBIL/Bio<br /> [copy] Copying 66<b=
r
/>files to /usr/local/GUS/gus_home/lib/perl/CBIL/Bio<br /> [mkdir]<br
/>Created dir: /usr/local/GUS/gus_home/test/CBIL/Bio<br /> [copy]<br
/>Copying 4 files to /usr/local/GUS/gus_home/test/CBIL/Bio<br /> =20
[mkdir]<br />Created dir: /usr/local/GUS/gus_home/data/CBIL/Bio<br /> =20
[copy]<br />Copying 9 files to /usr/local/GUS/gus_home/data/CBIL/Bio<br /=
>
[echo]<br />.<br /> [echo] Installing CBIL/CSP<br /> [copy]
Copying 1 file to<br />/usr/local/GUS/gus_home/bin<br /> [mkdir]
Created dir:<br />/usr/local/GUS/gus_home/lib/perl/CBIL/CSP<br /> =20
[copy] Copying 11<br />files to
/usr/local/GUS/gus_home/lib/perl/CBIL/CSP<br /> [mkdir]<br />Created
dir: /usr/local/GUS/gus_home/lib/java<br /> [copy] Copying 2<br
/>files to /usr/local/GUS/gus_home/lib/java<br /> [mkdir] Created
dir:<br />/usr/local/GUS/gus_home/doc/CBIL/CSP<br /> [copy] Copying 1=
0
files to<br />/usr/local/GUS/gus_home/doc/CBIL/CSP<br /> [mkdir]
Created dir:<br />/usr/local/GUS/project_home/CBIL/CSP/classes<br /> =20
[javac] Compiling 27<br />source files to
/usr/local/GUS/project_home/CBIL/CSP/classes<br /> <br />[javac]
Note:<br
/>/usr/local/GUS/project_home/CBIL/CSP/src/java/edu/cbil/csp/dialog/Actio=
n.java<br
/>uses or overrides a deprecated API.<br /> [javac] Note: Recompile
with<br />-Xlint:deprecation for details.<br /> [javac] Note: Some
input files<br />use unchecked or unsafe operations.<br /> [javac]
Note: Recompile with<br />-Xlint:unchecked for details.<br /> [jar]
Building jar:<br />/usr/local/GUS/gus_home/lib/java/CBIL-CSP.jar<br /> =
=20
[echo] .<br /> <br />[echo] Installing CBIL/Util<br /> [mkdir]
Created dir:<br />/usr/local/GUS/gus_home/lib/perl/CBIL/Util<br /> =20
[copy] Copying 8<br />files to
/usr/local/GUS/gus_home/lib/perl/CBIL/Util<br /> [mkdir]<br />Created
dir: /usr/local/GUS/gus_home/doc/CBIL/Util<br /> [copy]<br />Copying =
1
file to /usr/local/GUS/gus_home/doc/CBIL/Util<br /> [echo]<br />.<br
/> [echo] Installing CBIL/HQ<br /> [copy] Copying 1 file to<br
/>/usr/local/GUS/gus_home/bin<br /> [mkdir] Created dir:<br
/>/usr/local/GUS/gus_home/lib/perl/CBIL/HQ<br /> [copy] Copying 3
files<br />to /usr/local/GUS/gus_home/lib/perl/CBIL/HQ<br /> [echo]
.<br /> <br />[echo] Installing CBIL/ObjectMapper<br /> [mkdir]
Created dir:<br />/usr/local/GUS/gus_home/lib/perl/CBIL/ObjectMapper<br /=
>
[copy]<br />Copying 7 files to
/usr/local/GUS/gus_home/lib/perl/CBIL/ObjectMapper<br /> [copy]
Copying 1 file to /usr/local/GUS/gus_home/config<br /> <br />[mkdir]
Created dir: /usr/local/GUS/gus_home/doc/CBIL/ObjectMapper<br /> =20
[copy] Copying 1 file to<br
/>/usr/local/GUS/gus_home/doc/CBIL/ObjectMapper<br /> [concat] No
existing<br />files and no nested text, doing nothing<br /> [echo]
.<br /> <br />[echo] Installing GUS/Supported<br /> [copy] Copying
1 file to<br />/usr/local/GUS/gus_home/bin<br /> [mkdir] Created
dir:<br />/usr/local/GUS/gus_home/lib/perl/GUS/Supported<br /> [copy]
Copying 2<br />files to /usr/local/GUS/gus_home/lib/perl/GUS/Supported<br
/> [mkdir]<br />Created dir:
/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin<br /> [copy]
Copying 19 files to<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/Supported/Plugin<br /> =20
[copy]<br />Copying 2 files to /usr/local/GUS/gus_home/config<br /> =20
[mkdir] Created<br />dir: /usr/local/GUS/gus_home/doc/GUS/Supported<br />=
=20
[copy] Copying 5<br />files to
/usr/local/GUS/gus_home/doc/GUS/Supported<br /> [echo] .<br /> =20
[echo] Installing GUS/Community<br /> [copy] Copying 4 files to<br
/>/usr/local/GUS/gus_home/bin<br /> [mkdir] Created dir:<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/Community<br /> [copy] Copying
10<br />files to /usr/local/GUS/gus_home/lib/perl/GUS/Community<br /> =20
[copy]<br />Copying 2 files to /usr/local/GUS/gus_home/lib/java<br /> =20
[mkdir]<br />Created dir:
/usr/local/GUS/gus_home/lib/perl/GUS/Community/Plugin<br /> [copy]
Copying 41 files to<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/Community/Plugin<br /> =20
[copy]<br />Copying 10 files to /usr/local/GUS/gus_home/config<br /> =20
[mkdir]<br />Created dir: /usr/local/GUS/gus_home/doc/GUS/Community<br />=
=20
[copy]<br />Copying 7 files to
/usr/local/GUS/gus_home/doc/GUS/Community<br /> <br />[echo] .<br /> =
=20
[echo] Installing GUS/DBAdmin<br /> [copy] Copying<br />8 files to
/usr/local/GUS/gus_home/bin<br /> [mkdir] Created dir:<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/DBAdmin<br /> [copy] Copying
6<br />files to /usr/local/GUS/gus_home/lib/perl/GUS/DBAdmin<br /> =20
[copy]<br />Copying 5 files to /usr/local/GUS/gus_home/lib/java<br /> =20
[mkdir]<br />Created dir:
/usr/local/GUS/project_home/GUS/DBAdmin/classes<br /> <br />[javac]
Compiling 46 source files to<br
/>/usr/local/GUS/project_home/GUS/DBAdmin/classes<br /> [javac]
Note:<br />Some input files use unchecked or unsafe operations.<br /> =20
[javac]<br />Note: Recompile with -Xlint:unchecked for details.<br /> =
=20
[jar]<br />Building jar:
/usr/local/GUS/gus_home/lib/java/GUS-DBAdmin.jar<br /> <br />[echo]
.<br /> [echo] Installing GUS/GOPredict<br /> [copy]<br />Copying
3 files to /usr/local/GUS/gus_home/bin<br /> [mkdir] Created<br />dir:
/usr/local/GUS/gus_home/lib/perl/GUS/GOPredict<br /> [copy]<br
/>Copying 20 files to /usr/local/GUS/gus_home/lib/perl/GUS/GOPredict<br /=
>
[mkdir] Created dir:<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/GOPredict/Plugin<br /> =20
[copy]<br />Copying 8 files to<br
/>/usr/local/GUS/gus_home/lib/perl/GUS/GOPredict/Plugin<br /> =20
[mkdir]<br />Created dir: /usr/local/GUS/gus_home/doc/GUS/GOPredict<br />=
=20
[copy]<br />Copying 1 file to
/usr/local/GUS/gus_home/doc/GUS/GOPredict<br /> <br />[mkdir] Created
dir: /usr/local/GUS/project_home/GUS/GOPredict/classes<br /> [javac]
Compiling 10 source files to<br
/>/usr/local/GUS/project_home/GUS/GOPredict/classes<br /> [javac]
Note:<br />Some input files use unchecked or unsafe operations.<br /> =20
[javac]<br />Note: Recompile with -Xlint:unchecked for details.<br /> =
=20
[jar]<br />Building jar:
/usr/local/GUS/gus_home/lib/java/GUS-GOPredict.jar<br /> <br />[echo]
.<br /> [echo] Installing GUS/Schema<br /> [mkdir] Created<br
/>dir: /usr/local/GUS/project_home/GUS/Schema/classes<br /> [javac]<br
/>Compiling 1 source file to<br
/>/usr/local/GUS/project_home/GUS/Schema/classes<br /> [javac] Note:<b=
r
/>/usr/local/GUS/project_home/GUS/Schema/src/java/org/gusdb/schema/Instal=
lSchemaTask.java<br
/>uses unchecked or unsafe operations.<br /> [javac] Note: Recompile
with<br />-Xlint:unchecked for details.<br /> [jar] Building jar:<br
/>/usr/local/GUS/gus_home/lib/java/GUS-Schema.jar<br />[InstallSchema]
Aug<br />23, 2005 9:37:23 AM org.gusdb.schema.InstallSchemaTask execute<b=
r
/>[InstallSchema] INFO: Reading database from<br
/>/usr/local/GUS/project_home/GUS/Schema/gus_schema.xml<br
/>[InstallSchema]<br />Aug 23, 2005 9:37:23 AM
org.gusdb.dbadmin.reader.SchemaReader doRead<br />[InstallSchema] INFO:
Reading Database<br />[InstallSchema] Aug 23, 2005<br />9:37:27 AM
org.gusdb.dbadmin.model.Database resolveReferences<br />[InstallSchema]
INFO: Resolving Database References<br />[InstallSchema]<br />Aug 23, 200=
5
9:37:28 AM org.gusdb.dbadmin.util.DatabaseValidator<br />validate<br
/>[InstallSchema] INFO: Validating Database: 'null'<br />[InstallSchema]
Aug 23, 2005 9:37:28 AM<br />org.gusdb.schema.InstallSchemaTask
setTablespace<br />[InstallSchema]<br />INFO: Setting tablespaces to
gusdb<br />[InstallSchema] Aug 23, 2005<br />9:37:28 AM
org.gusdb.dbadmin.util.DatabaseValidator validate<br />[InstallSchema]
INFO: Validating Database: 'null'<br />[InstallSchema]<br />Aug 23, 2005
9:37:28 AM org.gusdb.dbadmin.writer.SchemaWriter write<br
/>[InstallSchema] INFO: Writing Database<br />[InstallSchema] Aug 23,
2005<br />9:37:29 AM org.gusdb.dbadmin.util.DatabaseValidator validate<br
/>[InstallSchema] INFO: Validating Database: 'null'<br
/>[InstallSchema]<br />Aug 23, 2005 9:37:29 AM
org.gusdb.dbadmin.writer.SchemaWriter write<br />[InstallSchema] INFO:
Writing Database<br /> <br />BUILD FAILED<br
/>/usr/local/GUS/project_home/install/build.xml:28: The following error<b=
r
/>occurred while executing this line:<br
/>/usr/local/GUS/project_home/GUS/build.xml:92: java.io.IOException:
Error<br />executing SQL: '<br />ALTER USER RAD QUOTA UNLIMITED ON gusdb'
Error:<br />ORA-00959: tablespace 'GUSDB' does not exist<br /> <br /> <br
/>Total<br />time: 22 seconds</font><br /></font><br /><br />The user
GUS<br />uses to connect has all sysdba privileges but the related to
rule, rule<br />set and evaluation context. <br /><br />I believe that
somehow the build<br />script can't not connect to the gusdb tablespace
sometimes. And there's<br />another strange thing with the
DatabaseValidator at some lines like<br />this:<br /><br /><font size=3D"=
1"
style=3D"font-family: courier
new,courier,monospace;">org.gusdb.dbadmin.util.DatabaseValidator<br
/>validate<br /><br />[InstallSchema] INFO: Validating Database:
'null'</font><br /><br />Can anyone give me a tip?<br /><br />Thanks <br
/><br />Adhemar Zerlotini Neto<br />Centro de Pesquisas Ren=E9 Rachou -
FIOCRUZ<br />Av. Augusto de Lima 1715<br />BH MG 30190-002, Brazil<br
/>Phone: +55-31-3349-7785
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