[GUSDEV] GUS plugin InsertGeneOntology missed loading data?

[Jian Lu <jl...@vb...>]

Hi group,

I downloaded Gene Ontology version 3.306 (component.ontology,function.ontology, process.ontology) and ran
GUS::Supported::Plugin::InsertGeneOntology to load them into our GUS database.
Here is my command:

ga GUS::Supported::Plugin::InsertGeneOntology --filePath /home/data/ontology --functionExtDbName 'GO Function' --processExtDbName 'GO Process' --componentExtDbName 'GO Component' --commit


Everything looks fine, no errors. It returned a result as "Created 19395 entries in GOTerm, 28145 entries in GORelationship, and 16375 entries in GOSynonym.  Skipped 0 total entries".

But when I was doing other data checking, I found there are three GO terms that have not been loaded, GO:009387, GO:0005331, GO:0009456. They do exist on the GO downloaded files. 

Has anyone used this plugin to load GO and checked its completeness? Please advise. Thanks.

Jian