Re: [GUSDEV] Problems with InsertGeneOntology Plugin (GUS 3.5)

[Michael S. <msa...@pc...>]

Hi Fabricio,

There is an bug for this when using it with Postgres:

https://www.cbil.upenn.edu/tracker/show_bug.cgi?id=3D41

It appears to be an issue at the database level-- Postgres doesn't seem to
like some of the foreign key constraints.  I'll reopen the bug since you've
confirmed it as a second group.

--Mike


On 7/19/05 9:32 PM, "fab...@de..." <fab...@de...> wrote=
:

> Hello all,=20
>=20
> we're trying to load some data into gus using the several plugins. At the
> moment
> we're trying to insert the GeneOntology files:
>=20
> * process.ontology
> * component.ontology
> * function.ontology
> * GO.defs
>=20
> To do this we're using the command:
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> ga GUS::Supported::Plugin::InsertGeneOntology --filePath
> /usr/local/GUS/GUS35/gus_home/boostrap/gontology --functionExtDbName 'GO
> Function' --processExtDbName 'GO Process' --componentExtDbName 'GO Compon=
ent'
> --createRelease --commit
>=20
> and seems to be ok. We received some outputs from the execution process a=
nd it
> stops after "Loading sres.goterm"... something like this.
>=20
> And remains at that point until now... The proccess is running for a many
> times
> and never finish (as we can see by the outputs).
>=20
> Having seeing our machine load average it shows that the machine isn't
> overloaded, but the ga process is still running.
>=20
> Does anyone have already had a problem like this? Is it something wrong w=
ith
> our
> Plugin command above?
>=20
> Thanks a lot,
>=20
> Fabr=EDcio.
>=20
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>=20
>=20
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