Re: [GUSDEV] class notdefyet on building GUS 3.5

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I'm seeing a similar problem; this is with postgresql 8.0 on a mac =20
running Tiger.

gus.config info about the db:

dbiDsn=3DDBI:Pg:dbname=3Dgus;port=3D10001
jdbcDsn=3Djdbc:postgresql://localhost:10001/gus?user=3Dgus&password=3Dgus

# Login and Password to the RDBMS

databaseLogin=3Dgus
databasePassword=3Dgus

I didn't see any errors on the load, and there's a bunch of stuff in =20
the database; however, I don't see a core.algorithm_row table that =20
perhaps is what is trying to be used:

gus=3D> \dn
       List of schemas
         Name        | Owner
--------------------+-------
core               | gus
corever            | gus
dots               | gus
dotsver            | gus
information_schema | olson
pg_catalog         | olson
pg_toast           | olson
prot               | gus
protver            | gus
public             | olson
rad                | gus
radver             | gus
sres               | gus
sresver            | gus
study              | gus
studyver           | gus
tess               | gus
tessver            | gus
(18 rows)

gus=3D> \dt core.
                 List of relations
Schema |          Name           | Type  | Owner
--------+-------------------------+-------+-------
core   | algorithm               | table | gus
core   | algorithmimplementation | table | gus
core   | algorithminvocation     | table | gus
core   | algorithmparam          | table | gus
core   | algorithmparamkey       | table | gus
core   | algorithmparamkeytype   | table | gus
core   | analysisalgorithm       | table | gus
core   | category                | table | gus
core   | databasedocumentation   | table | gus
core   | databaseinfo            | table | gus
core   | databaseversion         | table | gus
core   | groupinfo               | table | gus
core   | projectinfo             | table | gus
core   | tablecategory           | table | gus
core   | tableinfo               | table | gus
core   | usergroup               | table | gus
core   | userinfo                | table | gus
core   | userproject             | table | gus
(18 rows)
gus=3D> select table_id, name from core.tableinfo where name like '%=20
Algorith%';
table_id |            name
----------+----------------------------
       592 | AnalysisAlgorithmVer
       593 | AlgorithmInvocationVer
       594 | AlgorithmParamKeyVer
       596 | AlgorithmParamVer
       604 | AlgorithmImplementationVer
       605 | AlgorithmVer
       606 | AlgorithmParamKeyTypeVer
       701 | AlgorithmInvocation
       702 | Algorithm
       704 | AnalysisAlgorithm
       706 | AlgorithmParamKeyType
       707 | AlgorithmParam
       713 | AlgorithmImplementation
       714 | AlgorithmParamKey
(14 rows)

errors follow.

Thanks,
--bob

      [exec] Warning: No JavaType found for 'modification_date', =20
type: 'timestamp'
      [exec] Warning: No JavaType found for 'modification_date', =20
type: 'timestamp'
      [copy] Copying 2 files to /Users/olson/GUS/project_home/GUS/=20
Model/src/java/org/gusdb/model/DoTS
      [copy] Copying 1 file to /Users/olson/GUS/project_home/GUS/=20
Model/src/java/org/gusdb/model/SRes
      [echo] Starting target: JavaModel
     [mkdir] Created dir: /Users/olson/GUS/gus_home/schema
      [echo] .
      [echo] Installing GUS/Model
      [copy] Copying 2 files to /Users/olson/GUS/gus_home/bin
      [copy] Copying 1546 files to /Users/olson/GUS/gus_home/lib/perl/=20=

GUS/Model
     [mkdir] Created dir: /Users/olson/GUS/project_home/GUS/Model/=20
classes
     [javac] Compiling 1260 source files to /Users/olson/GUS/=20
project_home/GUS/Model/classes
     [javac] /Users/olson/GUS/project_home/GUS/Model/src/java/org/=20
gusdb/model/Core/Algorithm_Row.java:86: cannot resolve symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.Core.Algorithm_Row
     [javac]     public void setModificationDate (notdefyet value)
     [javac]                                      ^
     [javac] /Users/olson/GUS/project_home/GUS/Model/src/java/org/=20
gusdb/model/Core/Algorithm_Row.java:91: cannot resolve symbol
     [javac] symbol  : class notdefyet
     [javac] location: class org.gusdb.model.Core.Algorithm_Row
     [javac]     public notdefyet getModificationDate () { return =20
(notdefyet)get_Attribute("modification_date"); }
     [javac]            ^
     [javac] /Users/olson/GUS/project_home/GUS/Model/src/java/org/=20
gusdb/model/Core/AlgorithmInvocation_Row.java:54: cannot resolve symbol

On Jul 4, 2005, at 12:51 AM, Michael Saffitz wrote:

>
> Hi Fabricio,
>
> This is usually indicative that the schema was not properly loaded =20
> into the
> RDBMS.  Can you review the output from the very first run (when you =20=

> did
> -installDBSchema) to confirm there were no SQL errors?  Can you =20
> connect to
> your DB and confirm that the objects exist-- especially that the
> core.tableinfo table is fully populated.
>
> If the DB was not fully installed, you must resolve the issue =20
> preventing
> installation, and then remove all GUS objects that may have been =20
> partially
> created (i.e. Users/schemas, tables, sequences, etc.)  Then you can =20=

> try
> again.  (I believe this is outlined in the install docs).
>
> If all of the objects are being fully installed, then it may be =20
> that your
> jdbc connection string has different settings than your perl =20
> connection
> string.  Make sure that your $GUS_CONFIG_FILE has the correct =20
> dbiDsn for
> your database.
>
> Let me know how the above goes and we'll figure out the next step.
>
> --Mike
>
> On 7/3/05 10:18 PM, "Fabr=EDcio" <fab...@de...> wrote:
>
>
>> Hello all,
>>
>>
>>
>> We=92re trying to install the new GUS 3.5 release, and we=92re having =
=20
>> a problem
>> when we have to run =93build GUS install -append -installDBSchema=94. =
=20
>> After a
>> time running the building process stops whit many errors like this:
>>
>>
>>
>> [javac]/usr/local/GUS/GUS35/project_home/GUS/Model/src/java/org/=20
>> gusdb/model/
>> Core/AlgorithmInvocation_Row.java:99: cannot resolve symbol
>> [javac]symbol  : class notdefyet
>> [javac]location: class org.gusdb.model.Core.AlgorithmInvocation_Row
>> [javac]public notdefyet getModificationDate () { return
>> (notdefyet)get_Attribute("modification_date"); }
>> [javac]            ^
>>
>>
>>
>> Despite these errors, the schema was generated in our postgres, =20
>> but we don=92t
>> know if it=92s complete.
>>
>>
>>
>> We tried to build again using only the command =93build GUS install =96=
=20
>> append=94
>> and we put the output in a file as you can see here:
>>
>>
>>
>> http://www.de9.ime.eb.br/~fabricio/out.txt
>>
>>
>>
>> Can you tell us why the notdefyet class isn=92t found?
>>
>>
>>
>> Thanks a lot,
>>
>>
>>
>> Fabr=EDcio.
>>
>>
>>
>>
>>
>>
>>
>>
>
>
>
>
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