Re: [GUSDEV] Re: GUS 3.5 installation failure

[Jian Lu <jl...@vb...>]

Mike,

I did the second run and still failed.  The error messages are almost 
the same.

Thanks,

Jian
Michael Saffitz wrote:

>Hi Jian,
>
>Have you tried running this command a second time?  It may be that the jar
>was installed on the first run (and not properly loaded in the classpath),
>and on the second run it is in the classpath and runs properly.
>
>It's strange because I believe these lines:
>
>[WritePropertyFiles] INFO: Recreating GUS-PluginMgr.prop file
>
>are written using the commons-logging libraries.
>
>Thanks, and sorry for the difficulties.  (Has anyone else on the list
>successfully downloaded and installed 3.5?)
>
>--Mike
>
>On 6/26/05 4:19 PM, "Jian Lu" <jl...@vb...> wrote:
>
>  
>
>>Hi Mike,
>>
>>The commons-logging.jar is in my $GUS_HOME/lib/java.
>>
>>Jian
>>
>>Michael Saffitz wrote:
>>
>>    
>>
>>>Hi Jian,
>>>
>>>Can you confirm that the commons-logging.jar is in your $GUS_HOME/lib/java
>>>(it should have been installed from $PROJECT_HOME/GUS/DBAdmin/lib/java/
>>>
>>>Thanks,
>>>
>>>Mike
>>>
>>>On 6/25/05 5:02 PM, "Jian Lu" <jl...@vb...> wrote:
>>>
>>> 
>>>
>>>      
>>>
>>>>I downloaded the official release, followed the installation instruction
>>>>and failed to install. Please advise. Thank you.
>>>>
>>>>build GUS install -append -installDBSchema
>>>>[WritePropertyFiles] Jun 25, 2005 3:02:40 PM
>>>>org.gusdb.install.WritePropertyFileTask writeInstallProp
>>>>[WritePropertyFiles] INFO: Recreating install.prop file
>>>>[WritePropertyFiles] Jun 25, 2005 3:02:40 PM
>>>>org.gusdb.install.WritePropertyFileTask writePluginProp
>>>>[WritePropertyFiles] INFO: Recreating GUS-PluginMgr.prop file
>>>>    [copy] Copying 1 file to /home/brcgusts/GUS/gus_home/config
>>>>    [copy] Copying 1 file to /home/brcgusts/GUS/gus_home/config
>>>>    [echo] .
>>>>    [echo] Installing CBIL/Bio
>>>>    [echo] .
>>>>    [echo] Installing CBIL/CSP
>>>>    [echo] .
>>>>    [echo] Installing CBIL/Util
>>>>    [echo] .
>>>>    [echo] Installing CBIL/HQ
>>>>    [echo] .
>>>>    [echo] Installing CBIL/ObjectMapper
>>>>  [concat] No existing files and no nested text, doing nothing
>>>>    [echo] .
>>>>    [echo] Installing GUS/Supported
>>>>    [echo] .
>>>>    [echo] Installing GUS/Community
>>>>    [echo] .
>>>>    [echo] Installing GUS/DBAdmin
>>>>    [echo] .
>>>>    [echo] Installing GUS/GOPredict
>>>>    [echo] .
>>>>    [echo] Installing GUS/Schema
>>>>[InstallSchema] Jun 25, 2005 3:02:46 PM
>>>>org.gusdb.schema.InstallSchemaTask execute
>>>>[InstallSchema] INFO: Reading database from
>>>>/home/brcgusts/GUS/project_home/GUS/Schema/gus_schema.xml
>>>>[InstallSchema] Jun 25, 2005 3:02:46 PM
>>>>org.gusdb.dbadmin.reader.SchemaReader doRead
>>>>[InstallSchema] INFO: Reading Database
>>>>[InstallSchema] Jun 25, 2005 3:02:46 PM
>>>>org.apache.commons.digester.Digester startElement
>>>>[InstallSchema] SEVERE: Begin event threw error
>>>>[InstallSchema] java.lang.NoClassDefFoundError:
>>>>org/apache/commons/logging/LogFactory
>>>>[InstallSchema]         at
>>>>
>>>>   
>>>>
>>>>        
>>>>
>>>org.apache.commons.beanutils.ConvertUtilsBean.<init>(ConvertUtilsBean.java:13
>>>0>
>>>)
>>> 
>>>
>>>      
>>>
>>>>[InstallSchema]         at
>>>>org.apache.commons.beanutils.BeanUtilsBean.<init>(BeanUtilsBean.java:110)
>>>>[InstallSchema]         at
>>>>org.apache.commons.beanutils.BeanUtilsBean$1.initialValue(BeanUtilsBean.java
>>>>:6
>>>>8)
>>>>[InstallSchema]         at
>>>>org.apache.commons.beanutils.ContextClassLoaderLocal.get(ContextClassLoaderL
>>>>oc
>>>>al.java:80)
>>>>[InstallSchema]         at
>>>>
>>>>        
>>>>
>org.apache.commons.beanutils.BeanUtilsBean.getInstance(BeanUtilsBean.java:78>>>
>)
>  
>
>>>>[InstallSchema]         at
>>>>org.apache.commons.beanutils.BeanUtils.populate(BeanUtils.java:298)
>>>>[InstallSchema]         at
>>>>
>>>>   
>>>>
>>>>        
>>>>
>>>org.apache.commons.digester.SetPropertiesRule.begin(SetPropertiesRule.java:21
>>>7>
>>>)
>>> 
>>>
>>>      
>>>
>>>>[InstallSchema]         at
>>>>org.apache.commons.digester.Rule.begin(Rule.java:152)
>>>>[InstallSchema]         at
>>>>org.apache.commons.digester.Digester.startElement(Digester.java:1286)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.impl.dtd.XMLDTDValidator.startElement(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unkno
>>>>wn
>>>>Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.impl.XMLDocumentScannerImpl$ContentDispatcher.scanRootElem
>>>>en
>>>>tHook(Unknown 
>>>>Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatc
>>>>he
>>>>r.dispatch(Unknown
>>>>Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
>>>>Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
>>>>[InstallSchema]         at
>>>>org.apache.commons.digester.Digester.parse(Digester.java:1591)
>>>>[InstallSchema]         at
>>>>org.gusdb.dbadmin.reader.XMLReader.readDatabase(XMLReader.java:43)
>>>>[InstallSchema]         at
>>>>org.gusdb.dbadmin.reader.SchemaReader.doRead(SchemaReader.java:50)
>>>>[InstallSchema]         at
>>>>org.gusdb.dbadmin.reader.SchemaReader.read(SchemaReader.java:38)
>>>>[InstallSchema]         at
>>>>org.gusdb.schema.InstallSchemaTask.execute(InstallSchemaTask.java:89)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
>>>>[InstallSchema]         at org.apache.tools.ant.Task.perform(Task.java:364)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Target.execute(Target.java:341)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Target.performTasks(Target.java:369)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckEx
>>>>ec
>>>>utor.java:37)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Project.executeTargets(Project.java:1068)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:382)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
>>>>[InstallSchema]         at org.apache.tools.ant.Task.perform(Task.java:364)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Target.execute(Target.java:341)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Target.performTasks(Target.java:369)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Project.executeTarget(Project.java:1185)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.j
>>>>av
>>>>a:40)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.Project.executeTargets(Project.java:1068)
>>>>[InstallSchema]         at org.apache.tools.ant.Main.runBuild(Main.java:668)
>>>>[InstallSchema]         at org.apache.tools.ant.Main.startAnt(Main.java:187)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
>>>>[InstallSchema]         at
>>>>org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
>>>>
>>>>BUILD FAILED
>>>>/home/brcgusts/GUS/project_home/install/build.xml:28: The following
>>>>error occurred while executing this line:
>>>>java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory
>>>>
>>>>Total time: 6 seconds
>>>>
>>>>   
>>>>
>>>>        
>>>>
>>>
>>>
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>>> 
>>>
>>>      
>>>
>
>  
>