[GUSDEV] Re: GUS 3.5 installation failure

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Hi Jian,

Can you confirm that the commons-logging.jar is in your $GUS_HOME/lib/java
(it should have been installed from $PROJECT_HOME/GUS/DBAdmin/lib/java/

Thanks,

Mike

On 6/25/05 5:02 PM, "Jian Lu" <jl...@vb...> wrote:

> I downloaded the official release, followed the installation instruction
> and failed to install. Please advise. Thank you.
> 
>  build GUS install -append -installDBSchema
> [WritePropertyFiles] Jun 25, 2005 3:02:40 PM
> org.gusdb.install.WritePropertyFileTask writeInstallProp
> [WritePropertyFiles] INFO: Recreating install.prop file
> [WritePropertyFiles] Jun 25, 2005 3:02:40 PM
> org.gusdb.install.WritePropertyFileTask writePluginProp
> [WritePropertyFiles] INFO: Recreating GUS-PluginMgr.prop file
>      [copy] Copying 1 file to /home/brcgusts/GUS/gus_home/config
>      [copy] Copying 1 file to /home/brcgusts/GUS/gus_home/config
>      [echo] .
>      [echo] Installing CBIL/Bio
>      [echo] .
>      [echo] Installing CBIL/CSP
>      [echo] .
>      [echo] Installing CBIL/Util
>      [echo] .
>      [echo] Installing CBIL/HQ
>      [echo] .
>      [echo] Installing CBIL/ObjectMapper
>    [concat] No existing files and no nested text, doing nothing
>      [echo] .
>      [echo] Installing GUS/Supported
>      [echo] .
>      [echo] Installing GUS/Community
>      [echo] .
>      [echo] Installing GUS/DBAdmin
>      [echo] .
>      [echo] Installing GUS/GOPredict
>      [echo] .
>      [echo] Installing GUS/Schema
> [InstallSchema] Jun 25, 2005 3:02:46 PM
> org.gusdb.schema.InstallSchemaTask execute
> [InstallSchema] INFO: Reading database from
> /home/brcgusts/GUS/project_home/GUS/Schema/gus_schema.xml
> [InstallSchema] Jun 25, 2005 3:02:46 PM
> org.gusdb.dbadmin.reader.SchemaReader doRead
> [InstallSchema] INFO: Reading Database
> [InstallSchema] Jun 25, 2005 3:02:46 PM
> org.apache.commons.digester.Digester startElement
> [InstallSchema] SEVERE: Begin event threw error
> [InstallSchema] java.lang.NoClassDefFoundError:
> org/apache/commons/logging/LogFactory
> [InstallSchema]         at
> 
org.apache.commons.beanutils.ConvertUtilsBean.<init>(ConvertUtilsBean.java:130>
)
> [InstallSchema]         at
> org.apache.commons.beanutils.BeanUtilsBean.<init>(BeanUtilsBean.java:110)
> [InstallSchema]         at
> org.apache.commons.beanutils.BeanUtilsBean$1.initialValue(BeanUtilsBean.java:6
> 8)
> [InstallSchema]         at
> org.apache.commons.beanutils.ContextClassLoaderLocal.get(ContextClassLoaderLoc
> al.java:80)
> [InstallSchema]         at
> org.apache.commons.beanutils.BeanUtilsBean.getInstance(BeanUtilsBean.java:78)
> [InstallSchema]         at
> org.apache.commons.beanutils.BeanUtils.populate(BeanUtils.java:298)
> [InstallSchema]         at
> 
org.apache.commons.digester.SetPropertiesRule.begin(SetPropertiesRule.java:217>
)
> [InstallSchema]         at
> org.apache.commons.digester.Rule.begin(Rule.java:152)
> [InstallSchema]         at
> org.apache.commons.digester.Digester.startElement(Digester.java:1286)
> [InstallSchema]         at
> org.apache.xerces.parsers.AbstractSAXParser.startElement(Unknown Source)
> [InstallSchema]         at
> org.apache.xerces.impl.dtd.XMLDTDValidator.startElement(Unknown Source)
> [InstallSchema]         at
> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanStartElement(Unknown
> Source)
> [InstallSchema]         at
> org.apache.xerces.impl.XMLDocumentScannerImpl$ContentDispatcher.scanRootElemen
> tHook(Unknown 
> Source)
> [InstallSchema]         at
> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl$FragmentContentDispatche
> r.dispatch(Unknown
> Source)
> [InstallSchema]         at
> org.apache.xerces.impl.XMLDocumentFragmentScannerImpl.scanDocument(Unknown
> Source)
> [InstallSchema]         at
> org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> [InstallSchema]         at
> org.apache.xerces.parsers.XML11Configuration.parse(Unknown Source)
> [InstallSchema]         at
> org.apache.xerces.parsers.XMLParser.parse(Unknown Source)
> [InstallSchema]         at
> org.apache.xerces.parsers.AbstractSAXParser.parse(Unknown Source)
> [InstallSchema]         at
> org.apache.commons.digester.Digester.parse(Digester.java:1591)
> [InstallSchema]         at
> org.gusdb.dbadmin.reader.XMLReader.readDatabase(XMLReader.java:43)
> [InstallSchema]         at
> org.gusdb.dbadmin.reader.SchemaReader.doRead(SchemaReader.java:50)
> [InstallSchema]         at
> org.gusdb.dbadmin.reader.SchemaReader.read(SchemaReader.java:38)
> [InstallSchema]         at
> org.gusdb.schema.InstallSchemaTask.execute(InstallSchemaTask.java:89)
> [InstallSchema]         at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> [InstallSchema]         at org.apache.tools.ant.Task.perform(Task.java:364)
> [InstallSchema]         at
> org.apache.tools.ant.Target.execute(Target.java:341)
> [InstallSchema]         at
> org.apache.tools.ant.Target.performTasks(Target.java:369)
> [InstallSchema]         at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
> [InstallSchema]         at
> org.apache.tools.ant.helper.SingleCheckExecutor.executeTargets(SingleCheckExec
> utor.java:37)
> [InstallSchema]         at
> org.apache.tools.ant.Project.executeTargets(Project.java:1068)
> [InstallSchema]         at
> org.apache.tools.ant.taskdefs.Ant.execute(Ant.java:382)
> [InstallSchema]         at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:275)
> [InstallSchema]         at org.apache.tools.ant.Task.perform(Task.java:364)
> [InstallSchema]         at
> org.apache.tools.ant.Target.execute(Target.java:341)
> [InstallSchema]         at
> org.apache.tools.ant.Target.performTasks(Target.java:369)
> [InstallSchema]         at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1216)
> [InstallSchema]         at
> org.apache.tools.ant.Project.executeTarget(Project.java:1185)
> [InstallSchema]         at
> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.jav
> a:40)
> [InstallSchema]         at
> org.apache.tools.ant.Project.executeTargets(Project.java:1068)
> [InstallSchema]         at org.apache.tools.ant.Main.runBuild(Main.java:668)
> [InstallSchema]         at org.apache.tools.ant.Main.startAnt(Main.java:187)
> [InstallSchema]         at
> org.apache.tools.ant.launch.Launcher.run(Launcher.java:246)
> [InstallSchema]         at
> org.apache.tools.ant.launch.Launcher.main(Launcher.java:67)
> 
> BUILD FAILED
> /home/brcgusts/GUS/project_home/install/build.xml:28: The following
> error occurred while executing this line:
> java.lang.NoClassDefFoundError: org/apache/commons/logging/LogFactory
> 
> Total time: 6 seconds
> 