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From: <ju...@cs...> - 2005-05-23 16:17:16
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I wrote:
>
> From where does one obtain the utility 'blastSimilarity'?
>
I ask because Steve Fisher's recent mail indicates that
this utility is useful in conjunction with LoadBlastSimFast:
From: Steve Fischer <sfi...@pc...>
Date: Fri, 11 Feb 2005 08:56:26 -0500
Message-ID: <420...@pc...>
To: Poliana Mateus <pol...@gm...>
Subject: Re: [Gusdev-gusdev] parseBlastFilesForSimilarity.pl
Cc: gus...@li...
poliana-
oops, the usage statement for LoadBlastSimFast is out of date. it
should instruct you to use the blastSimilarity command.
LoadBlastSimFast makes a big assumption, that the subject and query
sequences are in GUS, and their def. lines have GUS primary keys.
Are your sequences already loaded into GUS?
steve
and a Google search on 'blastSimilarity' yields almost nothing.
In addition, or possibly instead of, could someone share with me
a sample input file for LoadBlastSimFast?
Thank you for your help.
Josef Jurek, Ph.D.
Daphne Preuss Laboratory
Molecular Genetics and Cell Biology
The University of Chicago
ju...@cs...
voice: (773) 834-3985
fax: (773) 702-6648
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