[GUSDEV] GBParser error

[<fab...@de...>]

Hello all,

we are trying to load a genbank file into GUS by GBParser. We downloaded =
a file
from NCBI (sequences.gb) as a result search about "tripanosoma cruzi". Wh=
en we
executed the command to run the GBParser (ga GUS::Common::Plugin::GBParse=
r
--file=3Dsequences.gb --gbRel=3D145.0 --db_rel_id=3D62 --commit) we got t=
he following
outputs  on the screen:

...
ERR     LINE=3D234512     unparsed line                      =20
/locus_tag=3D"SCO7809"
ERR     LINE=3D234513     unparsed line                        /note=3D"S=
C8E7.06,
possible TetR-family transcriptional
ERR     LINE=3D234514     unparsed line                        regulator,=
 len:
210
aa. Similar to several other members
ERR     LINE=3D234515     unparsed line                        of the Tet=
R-family
e.g. Streptomyces glaucescens
ERR     LINE=3D234516     unparsed line                        SW:TCMR_ST=
RGA
(EMBL:M80674) tetracenomycin C
ERR     LINE=3D234517     unparsed line                        transcript=
ional
repressor, TcmR (226 aa), fasta scores
ERR     LINE=3D234518     unparsed line                        opt: 187 z=
-score:
235.6 E(): 1.2e-05 26.4% identity in 197
ERR     LINE=3D234519     unparsed line                        aa overlap=
 and
Streptomyces coelicolor TR:CAB88457
ERR     LINE=3D234520     unparsed line                        (EMBL:AL35=
3815)
putative TetR-family transcriptional
...
and finally this,
ERR     LINE=3D235521     unparsed line        RBS           =20
complement(8667068..8667073)
VLD     CBIL::Bio::GenBank::Origin      1
Tue May  3 15:28:12 2005        STATUS  N=3D1 ACC=3DNC_003888      =20
TOTAL_OBJECTS=3D17
Tue May  3 15:28:35 2005        Genbank entries inserted=3D 0;  updated=3D=
 0; total
#(inserted::updated::deleted)=3D17::::
Tue May  3 15:28:35 2005        FAILURES        Unable to process 2 entri=
es.
See
gbparserFailures/
Tue May  3 15:28:35 2005        RESULT  Genbank entries inserted=3D 0;  u=
pdated=3D
0;  failed=3D 2

In the gbparserFailures/errors file has only this two lines:

------------------ entry number 1 -----------------
Can't call method "getSingleFeature" on an undefined value at
/usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 311, =
<GEN0>
line 379982.
------------------ entry number 2 -----------------
Can't call method "getAccession" on an undefined value at
/usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/GBParser.pm line 223, =
<GEN0>
line 379983.

Does anyone know what the problem is?

Thanks a lot.


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