Re: [GUSDEV] Re: [Gusdev-gusdev] draft of GUS paper - please read

[Sucheta T. <su...@vb...>]

Hi Steve,

The query is cgi based except for the advanced query.Other than that
boolean, history are part of wdk classic. Toolkit is agin our own, based
on PHP. Since the servlet blast was slower, I implemented this one, which
is much faster.

I think we can work together to release this part of frontend, as
additional package if the users are interested.

-Sucheta

> sucheta-
>
> i looked at the site.   wow, that's great!!!
>
> as i look at it, it seems that the querying, history, boolean and
> toolkit seem to be WDK-Classic.   Is that right?
>
> It looks like the Annotate is cgi.   (i look forward to hearing from you
> how you made this part).
>
> As i mentioned in previous mail, cryptodb will be coming live any day
> now, and you can see the new WDK.   (it doesn't have history yet).
> But, it should be very easy for you to transition the querying and
> boolean to the new wdk.   the new wdk is much, much easier to use, and
> is already starting to show its power.    the cryptodb team developed a
> GBrowse adaptor so that GBrowse is easy to use with it.
>
> steve
>
>
> Sucheta Tripathy wrote:
>
>>Hi Alberto,
>>
>>We had wdk classic installed for the frontend, but somehow we could not
>>make it work the way we wanted. So we built our cgi based browser, and
>>other accessories.We still have wdk classic for certain things like
>>boolean/advanced query and history, but I may still need to work on those
>>to make them fully functional. We are currently into modularising the
>>components of the browser, so that it can be easily implemented for
>>different applications.Then it will be released for distribution.
>>
>>Sucheta
>>
>>
>>
>>>Hi Sucheta,
>>>
>>>Congrats on the site and DB, looks great.
>>>
>>>So, looks like you have used (built) a CGI-based browser instead using
>>>the WDK (we have been unable to have it completely debugged for the GUS-
>>>Postgres)... did you give any try to WDK and the GUS-Postgres ?
>>>
>>>Looking forward to the public release of your browser.
>>>
>>>Cheers, Alberto
>>>
>>>
>>>On Mon, 2005-04-04 at 16:11 -0400, Sucheta Tripathy wrote:
>>>
>>>
>>>>Dear Group,
>>>>
>>>>I just wanted to inform you that we have released our phytophthraDB
>>>>based
>>>>on GUS. Steve, if you would like to mention in your paper.
>>>>
>>>>We have built a brand new browser on the top of GUS database and also
>>>>have
>>>>lots of additional features including a community annotation interface.
>>>>You
>>>>may check it out at:
>>>>
>>>>http://phytophthora.vbi.vt.edu/
>>>>
>>>>The browser will be shortly released after licensing. Thank you all for
>>>>the
>>>>support.
>>>>
>>>>Sucheta
>>>>
>>>>At 10:45 AM 4/4/2005 -0400, Steve Fischer wrote:
>>>>
>>>>
>>>>>GUS users-
>>>>>
>>>>>Attached is a draft of a paper describing the GUS system.  We have not
>>>>>
>>>>>
>>>>yet
>>>>
>>>>
>>>>>finalized what journal we'll be submitting it to.
>>>>>
>>>>>We would like your feedback on the paper before we submit it.
>>>>>
>>>>>Also, there is a chart in the paper describing GUS users.   Please
>>>>>
>>>>>
>>>>confirm
>>>>
>>>>
>>>>>the information there that is pertinent to you.   If you are not in
>>>>> the
>>>>>chart and would like to be, please provide the necessary information.
>>>>>
>>>>>
>>>>If
>>>>
>>>>
>>>>>you are on the chart and would like to be removed, please let me know.
>>>>>
>>>>>Thanks in advance for your feedback,
>>>>>Steve
>>>>>
>>>>>
>>>>>
>>>>>
>>
>>
>>
>>
>


-- 
Sucheta Tripathy
Virginia Bioinformatics Institute Phase-I
Washington street.
Virginia Tech.
Blacksburg,VA 24061-0447
phone:(540)231-8138
Fax:  (540) 231-2606