Re: [GUSDEV] Re: [Gusdev-gusdev] draft of GUS paper - please read

[Steve F. <sfi...@pc...>]

sucheta-

i looked at the site.   wow, that's great!!!

as i look at it, it seems that the querying, history, boolean and 
toolkit seem to be WDK-Classic.   Is that right?

It looks like the Annotate is cgi.   (i look forward to hearing from you 
how you made this part).

As i mentioned in previous mail, cryptodb will be coming live any day 
now, and you can see the new WDK.   (it doesn't have history yet).   
But, it should be very easy for you to transition the querying and 
boolean to the new wdk.   the new wdk is much, much easier to use, and 
is already starting to show its power.    the cryptodb team developed a 
GBrowse adaptor so that GBrowse is easy to use with it.

steve


Sucheta Tripathy wrote:

>Hi Alberto,
>
>We had wdk classic installed for the frontend, but somehow we could not
>make it work the way we wanted. So we built our cgi based browser, and
>other accessories.We still have wdk classic for certain things like
>boolean/advanced query and history, but I may still need to work on those
>to make them fully functional. We are currently into modularising the
>components of the browser, so that it can be easily implemented for
>different applications.Then it will be released for distribution.
>
>Sucheta
>
>  
>
>>Hi Sucheta,
>>
>>Congrats on the site and DB, looks great.
>>
>>So, looks like you have used (built) a CGI-based browser instead using
>>the WDK (we have been unable to have it completely debugged for the GUS-
>>Postgres)... did you give any try to WDK and the GUS-Postgres ?
>>
>>Looking forward to the public release of your browser.
>>
>>Cheers, Alberto
>>
>>
>>On Mon, 2005-04-04 at 16:11 -0400, Sucheta Tripathy wrote:
>>    
>>
>>>Dear Group,
>>>
>>>I just wanted to inform you that we have released our phytophthraDB
>>>based
>>>on GUS. Steve, if you would like to mention in your paper.
>>>
>>>We have built a brand new browser on the top of GUS database and also
>>>have
>>>lots of additional features including a community annotation interface.
>>>You
>>>may check it out at:
>>>
>>>http://phytophthora.vbi.vt.edu/
>>>
>>>The browser will be shortly released after licensing. Thank you all for
>>>the
>>>support.
>>>
>>>Sucheta
>>>
>>>At 10:45 AM 4/4/2005 -0400, Steve Fischer wrote:
>>>      
>>>
>>>>GUS users-
>>>>
>>>>Attached is a draft of a paper describing the GUS system.  We have not
>>>>        
>>>>
>>>yet
>>>      
>>>
>>>>finalized what journal we'll be submitting it to.
>>>>
>>>>We would like your feedback on the paper before we submit it.
>>>>
>>>>Also, there is a chart in the paper describing GUS users.   Please
>>>>        
>>>>
>>>confirm
>>>      
>>>
>>>>the information there that is pertinent to you.   If you are not in the
>>>>chart and would like to be, please provide the necessary information.
>>>>        
>>>>
>>>If
>>>      
>>>
>>>>you are on the chart and would like to be removed, please let me know.
>>>>
>>>>Thanks in advance for your feedback,
>>>>Steve
>>>>
>>>>
>>>>        
>>>>
>
>
>  
>