Re: [Gusdev-gusdev] Something about GUS Schemas

[Chris S. <sto...@pc...>]

Hi Fabricio,
Steve and I are working on a paper on GUS that should address this and=20=

I hope to circulate a draft shortly.
In the meantime I'm happy to try and answer questions. How much detail=20=

were you looking for? The really short version is that DoTS is for=20
sequence and sequence annotation. Sequence and feature tables are for=20
importing this information from external resources (e.g. GenBank),=20
whereas central dogma tables are for relating concepts of gene, RNAs,=20
and proteins based on sequence and features. RAD is for gene expression=20=

data mostly array-based. We had a paper on RAD detailing it (Manduchi=20
et al. Bioinformatics 2004). TESS is for relationships between=20
transcription factors and regulatory sequences captured in=20
grammar-based rules. SRes is for controlled vocabularies and ontologies=20=

referred to by other tables in GUS. Core is for tracking table info,=20
users, plugins, and algorithms. In GUS 3.5 we'll be introducing Study=20
for experimental design and descriptions (moved from RAD) and Prot for=20=

capturing 2D gel electrophoresis and mass spec based on mzXML and RAPAD=20=

(Jones et al/ Bioinformatics 2004). Hope this helps.
Chris

On Mar 7, 2005, at 1:36 PM, fab...@de... wrote:

> Hi all,
>
> I'm needing some document that could has an overview about GUS=20
> schemas. Does
> anyone know where I can find something explaining these schemas?=20
> Explaining
> what kind of data could be stored? What's the importance of any=20
> schemas?
>
> Any help?
>
> Thanks a lot,
>
> Fabricio
>
>
>
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