Re: [Gusdev-gusdev] Trash Tables

[Bindu G. <bi...@pc...>]

Ed -
Plasmodb has also been using RNAFeature; i dont know about the RNAType 
table. As Debbie writes, schema consolidation should consolidate these 
views, if it is possible.

Bindu

On Mar 4, 2005, at 10:07 AM, pi...@pc... wrote:

> There may be other uses of RNAFeature but the plugins I run use RNA 
> feature for
> mRNA features either predicted from an assembly of transcript 
> sequences or an
> mRNA sequence obtained from GenBank. Currently, RNAType and RNAFeature 
> have
> quite different attributes and seem to be intended for different uses 
> although
> it may be that they can be consolidated as they are both views of 
> RNAFeature.
>
>
>
>  Quoting Ed Robinson <ero...@ug...>:
>
>> What do you use RNA feature for as opposed to RNA type?
>>
>> ---- Original message ----
>>> Date: Fri,  4 Mar 2005 09:33:19 -0500
>>> From: pi...@pc...
>>> Subject: Re: [Gusdev-gusdev] Trash Tables
>>> To: Ed Robinson <ero...@ug...>
>>> Cc: gus...@li...
>>>
>>> We definitely use RNAFeature but I am not so sure about
>> ExonLocation. These are
>>> issues that should be raised in the schema discussions
>> because we may want to
>>> consolidate the views.
>>>
>>>                                                       Debbie
>>>
>>>
>>> Quoting Ed Robinson <ero...@ug...>:
>>>
>>>> We've stumbled upon a couple tables/views which seem
>>>> redundant.  Is anyone using these?
>>>>
>>>> Dots.ExonLocation - is completely subsumed by the fields in
>>>> dots.nalocation.
>>>>
>>>> Dots.RNAType, vs Dots.RNAFeature, these tables seem to belong
>>>> to one concept of a RNAFeature, is anyone using RNAFeature?
>>>> We want to use RNAType.
>>>>
>>>> All and any feedback would be appreciated.
>>>>
>>>> -Ed
>>>>
>>>>
>>>>
>>>> -----------------
>>>> Ed Robinson
>>>> Center for Tropical and Emerging Global Diseases
>>>> University of Georgia, Athens, GA 30602
>>>> ero...@ug.../(706)542.1447/254.8883
>>>>
>>>>
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>>>
>>>
>> -----------------
>> Ed Robinson
>> Center for Tropical and Emerging Global Diseases
>> University of Georgia, Athens, GA 30602
>> ero...@ug.../(706)542.1447/254.8883
>>
>
>
>
>
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