Re: [Gusdev-gusdev] Trash Tables

[<pi...@pc...>]

There may be other uses of RNAFeature but the plugins I run use RNA feature for
mRNA features either predicted from an assembly of transcript sequences or an
mRNA sequence obtained from GenBank. Currently, RNAType and RNAFeature have
quite different attributes and seem to be intended for different uses although
it may be that they can be consolidated as they are both views of RNAFeature.



 Quoting Ed Robinson <ero...@ug...>:

> What do you use RNA feature for as opposed to RNA type?
>
> ---- Original message ----
> >Date: Fri,  4 Mar 2005 09:33:19 -0500
> >From: pi...@pc...
> >Subject: Re: [Gusdev-gusdev] Trash Tables
> >To: Ed Robinson <ero...@ug...>
> >Cc: gus...@li...
> >
> >We definitely use RNAFeature but I am not so sure about
> ExonLocation. These are
> >issues that should be raised in the schema discussions
> because we may want to
> >consolidate the views.
> >
> >                                                       Debbie
> >
> >
> > Quoting Ed Robinson <ero...@ug...>:
> >
> >> We've stumbled upon a couple tables/views which seem
> >> redundant.  Is anyone using these?
> >>
> >> Dots.ExonLocation - is completely subsumed by the fields in
> >> dots.nalocation.
> >>
> >> Dots.RNAType, vs Dots.RNAFeature, these tables seem to belong
> >> to one concept of a RNAFeature, is anyone using RNAFeature?
> >> We want to use RNAType.
> >>
> >> All and any feedback would be appreciated.
> >>
> >> -Ed
> >>
> >>
> >>
> >> -----------------
> >> Ed Robinson
> >> Center for Tropical and Emerging Global Diseases
> >> University of Georgia, Athens, GA 30602
> >> ero...@ug.../(706)542.1447/254.8883
> >>
> >>
> >> -------------------------------------------------------
> >> SF email is sponsored by - The IT Product Guide
> >> Read honest & candid reviews on hundreds of IT Products
> from real users.
> >> Discover which products truly live up to the hype. Start
> reading now.
> >> http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click
> >> _______________________________________________
> >> Gusdev-gusdev mailing list
> >> Gus...@li...
> >> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
> >>
> >
> >
> -----------------
> Ed Robinson
> Center for Tropical and Emerging Global Diseases
> University of Georgia, Athens, GA 30602
> ero...@ug.../(706)542.1447/254.8883
>