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From: Poliana M. <pol...@gm...> - 2005-02-23 13:49:39
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I am trying to run the LoadNRD, but I have the following error:
[poliana@phytomonas gus_home]$ ga GUS::Common::Plugin::LoadNRDB
--algoinvo=1 --comment="Loading NRDB data" --temp_login="gus"
--sourceDB="93:ref,102:emb,156:gb,118:pir,119:sp,148:dbj,144:prf,48:pdb,46:pat,58:bbs,173:lcl,71:gnl"
--temp_password="******" --dbi_str="dbi:Pg:dbname=tryps"
--gitax="/usr/local/db/local/nrdb/gi_taxid_prot.dmp"
--nrdb="/usr/local/db/local/nrdb/nr" --extDbRelId="3027" --maketemp
--plugin --delete --commit
Wed Feb 23 09:25:04 2005 ***COMMIT ON***
There are 12 entries in the source database hash
Wed Feb 23 10:25:20 2005 There are 5821294 gi to taxon_id pairs
Wed Feb 23 10:30:27 2005 1000 sets have been processed
and put in the NRDBTemp table
Wed Feb 23 10:31:20 2005 2000 sets have been processed
and put in the NRDBTemp table
DBD::Pg::st execute failed: ERROR: null value in column
"external_db_rel_id" violates not-null constraint at
/usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line
281, <NRDB> line 6374.
Wed Feb 23 10:31:47 2005 3000 sets have been processed
and put in the NRDBTemp table
Wed Feb 23 10:32:10 2005 4000 sets have been processed
and put in the NRDBTemp table
Wed Feb 23 10:33:15 2005 6000 sets have been processed
and put in the NRDBTemp table
DBD::Pg::st execute failed: ERROR: null value in column
"external_db_rel_id" violates not-null constraint at
/usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line
281, <NRDB> line 19995.
DBD::Pg::st execute failed: ERROR: null value in column
"external_db_rel_id" violates not-null constraint at
/usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line
281, <NRDB> line 20179.
Wed Feb 23 10:34:03 2005 8000 sets have been processed
and put in the NRDBTemp table
......
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somebody has idea of as to correct?
Poliana
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