From: Poliana M. <pol...@gm...> - 2005-02-23 13:49:39
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I am trying to run the LoadNRD, but I have the following error: [poliana@phytomonas gus_home]$ ga GUS::Common::Plugin::LoadNRDB --algoinvo=1 --comment="Loading NRDB data" --temp_login="gus" --sourceDB="93:ref,102:emb,156:gb,118:pir,119:sp,148:dbj,144:prf,48:pdb,46:pat,58:bbs,173:lcl,71:gnl" --temp_password="******" --dbi_str="dbi:Pg:dbname=tryps" --gitax="/usr/local/db/local/nrdb/gi_taxid_prot.dmp" --nrdb="/usr/local/db/local/nrdb/nr" --extDbRelId="3027" --maketemp --plugin --delete --commit Wed Feb 23 09:25:04 2005 ***COMMIT ON*** There are 12 entries in the source database hash Wed Feb 23 10:25:20 2005 There are 5821294 gi to taxon_id pairs Wed Feb 23 10:30:27 2005 1000 sets have been processed and put in the NRDBTemp table Wed Feb 23 10:31:20 2005 2000 sets have been processed and put in the NRDBTemp table DBD::Pg::st execute failed: ERROR: null value in column "external_db_rel_id" violates not-null constraint at /usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line 281, <NRDB> line 6374. Wed Feb 23 10:31:47 2005 3000 sets have been processed and put in the NRDBTemp table Wed Feb 23 10:32:10 2005 4000 sets have been processed and put in the NRDBTemp table Wed Feb 23 10:33:15 2005 6000 sets have been processed and put in the NRDBTemp table DBD::Pg::st execute failed: ERROR: null value in column "external_db_rel_id" violates not-null constraint at /usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line 281, <NRDB> line 19995. DBD::Pg::st execute failed: ERROR: null value in column "external_db_rel_id" violates not-null constraint at /usr/local/GUS/gus_home/lib/perl/GUS/Common/Plugin/LoadNRDB.pm line 281, <NRDB> line 20179. Wed Feb 23 10:34:03 2005 8000 sets have been processed and put in the NRDBTemp table ...... -------------------------------------------------------------------------------------------------------------- somebody has idea of as to correct? Poliana |