From: <fed...@bi...> - 2005-02-21 15:01:52
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Hi everybody! I'm here again! I'm inserting data following the bootstrap but I had this errors: 1) for Taxonomy $ ga GUS::Common::Plugin::LoadTaxon \ > --gencode=/usr/local/src/gus_related/taxonomy/gencode.dmp \ > --names=/usr/local/src/gus_related/taxonomy/names.dmp \ > --nodes=/usr/local/src/gus_related/taxonomy/nodes.dmp ERROR: The names of the names.dmp, nodes.dmp, gencode.dmp and merged.dmp files must be provided on the command line. 2) for GO Ontology $ ga GUS::GOPredict::Plugin::LoadGoOntology --file_path=/usr/local/src/gus-related/ontology/ \ > --process_db_id=3003 \ > --process_ext_db_rel=165 \ > --function_db_id=3001 \ > --function_ext_db_rel=164 \ > --component_db_id=3002 \ > --component_ext_db_rel=166 \ /usr/local/src/gus-related/ontology/Mon Feb 21 15:45:51 2005 loading all .ontology files in /usr/local/src/gus-related/ontology/ in preparation for parsing Note: did not find file component.ontology in directory CBIL::Bio::GeneOntologyParser::Parser=HASH(0x89d2180)->getPath. To load this branch of the ontology specified by component.ontology, please put that file in the directory. Note: did not find file process.ontology in directory CBIL::Bio::GeneOntologyParser::Parser=HASH(0x89d2180)->getPath. To load this branch of the ontology specified by process.ontology, please put that file in the directory. Note: did not find file function.ontology in directory CBIL::Bio::GeneOntologyParser::Parser=HASH(0x89d2180)->getPath. To load this branch of the ontology specified by function.ontology, please put that file in the directory. Mon Feb 21 15:45:51 2005 parsing all .ontology files in preparation for inserting into database Mon Feb 21 15:45:51 2005 parsing finished; loading ontology into database Mon Feb 21 15:45:51 2005 RESULT Created 0 entries in GOTerm, 0 entries in GORelationship, and 0 entries in GOSynonym. Skipped 0 total entries Any help? Cheers, Federica |