Re: [Gusdev-gusdev] ragistering plugin

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Thanks a lot!
Federica
> ignore the problems.  you don't need those plugins.  so don't worry.
>
> steve
>
>
>
> fed...@bi... wrote:
>
>>I'm following the "Fidel and Sucheta's installation guide" and at this
>>moment I'm registering all the Plugin groups. Now I'm working to build
>> the
>>GUS platform. For now I have no other aim.
>>Both GoPlugin and LoadGoAssoc were correctly registered.
>>So what do you think I could do?
>>Federica
>>
>>
>>
>>
>>>federica-
>>>
>>>the problem, i believe, is that these are obsolete plugins.
>>>
>>>GoPlugin and LoadGoAssoc are current.
>>>
>>>I'll see if we can get this directory cleaned up.
>>>
>>>What is it you are trying to do?
>>>
>>>steve
>>>
>>>fed...@bi... wrote:
>>>
>>>
>>>
>>>>Of course!
>>>>
>>>>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc
>>>>
>>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC
>>>> (@INC
>>>>contains: /opt/gus_home/lib/perl
>>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm
>>>>line 24.
>>>>Compilation failed in require at (eval 3) line 1.
>>>>STACK TRACE
>>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>>       GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>>line 688
>>>>       GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>>line 479
>>>>       GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>>line 289
>>>>       GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>>line 198
>>>>       GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)')
>>>>called at /opt/gus_home/bin/ga line 11
>>>>
>>>>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions
>>>>
>>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC
>>>> (@INC
>>>>contains: /opt/gus_home/lib/perl
>>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>>>12.
>>>>BEGIN failed--compilation aborted at
>>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>>>12.
>>>>Compilation failed in require at (eval 3) line 1.
>>>>STACK TRACE
>>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>>
>>>>(..than the same as before)
>>>>
>>>>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions
>>>>
>>>>ERROR: Can't locate object method "new" via package
>>>>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1.
>>>>STACK TRACE
>>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>>locate object method "new" via package "GUS::GOPredict...') called at
>>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>>
>>>>(..than the same as before)
>>>>
>>>>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>>>
>>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>>>contains: /opt/gus_home/lib/perl
>>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>>BEGIN failed--compilation aborted at
>>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>>Compilation failed in require at (eval 3) line 1.
>>>>STACK TRACE
>>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>>
>>>>(..than the same as before)
>>>>
>>>>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>>>
>>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>>>contains: /opt/gus_home/lib/perl
>>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>>BEGIN failed--compilation aborted at
>>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>>Compilation failed in require at (eval 3) line 1.
>>>>STACK TRACE
>>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>>
>>>>(..than the same as before)
>>>>
>>>>Thanks, Federica
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>>can you send the error messages?
>>>>>
>>>>>thanks
>>>>>steve
>>>>>
>>>>>fed...@bi... wrote:
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>>Hi guys! I'm registering the plugin class name with ga; I had some
>>>>>>problems because ga can't find some perl files:
>>>>>>AASequenceGOFunction.pm,
>>>>>>ArrayControlLoader.pm, AssayAnalysis.pm.
>>>>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate
>>>>>>object method "new" via package
>>>>>>"GUS::GOPredict::Plugin::MakeGoPredictions".
>>>>>>Do you know why?? I think the building process has been correctly
>>>>>>made...
>>>>>>Thanks
>>>>>>Federica
>>>>>>
>>>>>>
>>>>>>
>>>>>>-------------------------------------------------------
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>>>>>>_______________________________________________
>>>>>>Gusdev-gusdev mailing list
>>>>>>Gus...@li...
>>>>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>-------------------------------------------------------
>>>>>SF email is sponsored by - The IT Product Guide
>>>>>Read honest & candid reviews on hundreds of IT Products from real
>>>>> users.
>>>>>Discover which products truly live up to the hype. Start reading now.
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>>>>>_______________________________________________
>>>>>Gusdev-gusdev mailing list
>>>>>Gus...@li...
>>>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>
>>>>
>>>>
>>>>
>>
>>
>>
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