From: <fed...@bi...> - 2005-02-16 14:12:46
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Thanks a lot! Federica > ignore the problems. you don't need those plugins. so don't worry. > > steve > > > > fed...@bi... wrote: > >>I'm following the "Fidel and Sucheta's installation guide" and at this >>moment I'm registering all the Plugin groups. Now I'm working to build >> the >>GUS platform. For now I have no other aim. >>Both GoPlugin and LoadGoAssoc were correctly registered. >>So what do you think I could do? >>Federica >> >> >> >> >>>federica- >>> >>>the problem, i believe, is that these are obsolete plugins. >>> >>>GoPlugin and LoadGoAssoc are current. >>> >>>I'll see if we can get this directory cleaned up. >>> >>>What is it you are trying to do? >>> >>>steve >>> >>>fed...@bi... wrote: >>> >>> >>> >>>>Of course! >>>> >>>>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc >>>> >>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC >>>> (@INC >>>>contains: /opt/gus_home/lib/perl >>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm >>>>line 24. >>>>Compilation failed in require at (eval 3) line 1. >>>>STACK TRACE >>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at >>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >>>> GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>>>line 688 >>>> GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>>>line 479 >>>> GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>>>line 289 >>>> GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>>>line 198 >>>> GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)') >>>>called at /opt/gus_home/bin/ga line 11 >>>> >>>>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions >>>> >>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC >>>> (@INC >>>>contains: /opt/gus_home/lib/perl >>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line >>>>12. >>>>BEGIN failed--compilation aborted at >>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line >>>>12. >>>>Compilation failed in require at (eval 3) line 1. >>>>STACK TRACE >>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at >>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >>>> >>>>(..than the same as before) >>>> >>>>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions >>>> >>>>ERROR: Can't locate object method "new" via package >>>>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1. >>>>STACK TRACE >>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>>>locate object method "new" via package "GUS::GOPredict...') called at >>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >>>> >>>>(..than the same as before) >>>> >>>>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader >>>> >>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC >>>>contains: /opt/gus_home/lib/perl >>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>>>BEGIN failed--compilation aborted at >>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>>>Compilation failed in require at (eval 3) line 1. >>>>STACK TRACE >>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at >>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >>>> >>>>(..than the same as before) >>>> >>>>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader >>>> >>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC >>>>contains: /opt/gus_home/lib/perl >>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>>>BEGIN failed--compilation aborted at >>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>>>Compilation failed in require at (eval 3) line 1. >>>>STACK TRACE >>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at >>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >>>> >>>>(..than the same as before) >>>> >>>>Thanks, Federica >>>> >>>> >>>> >>>> >>>> >>>>>can you send the error messages? >>>>> >>>>>thanks >>>>>steve >>>>> >>>>>fed...@bi... wrote: >>>>> >>>>> >>>>> >>>>> >>>>> >>>>>>Hi guys! I'm registering the plugin class name with ga; I had some >>>>>>problems because ga can't find some perl files: >>>>>>AASequenceGOFunction.pm, >>>>>>ArrayControlLoader.pm, AssayAnalysis.pm. >>>>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate >>>>>>object method "new" via package >>>>>>"GUS::GOPredict::Plugin::MakeGoPredictions". >>>>>>Do you know why?? I think the building process has been correctly >>>>>>made... >>>>>>Thanks >>>>>>Federica >>>>>> >>>>>> >>>>>> >>>>>>------------------------------------------------------- >>>>>>SF email is sponsored by - The IT Product Guide >>>>>>Read honest & candid reviews on hundreds of IT Products from real >>>>>>users. >>>>>>Discover which products truly live up to the hype. Start reading now. >>>>>>http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click >>>>>>_______________________________________________ >>>>>>Gusdev-gusdev mailing list >>>>>>Gus...@li... >>>>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>> >>>>>------------------------------------------------------- >>>>>SF email is sponsored by - The IT Product Guide >>>>>Read honest & candid reviews on hundreds of IT Products from real >>>>> users. >>>>>Discover which products truly live up to the hype. Start reading now. >>>>>http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click >>>>>_______________________________________________ >>>>>Gusdev-gusdev mailing list >>>>>Gus...@li... >>>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >>>>> >>>>> >>>>> >>>>> >>>>> >>>> >>>> >>>> >> >> >> > |