Re: [Gusdev-gusdev] ragistering plugin

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ignore the problems.  you don't need those plugins.  so don't worry.

steve

fed...@bi... wrote:

>I'm following the "Fidel and Sucheta's installation guide" and at this
>moment I'm registering all the Plugin groups. Now I'm working to build the
>GUS platform. For now I have no other aim.
>Both GoPlugin and LoadGoAssoc were correctly registered.
>So what do you think I could do?
>Federica
>
>
>  
>
>>federica-
>>
>>the problem, i believe, is that these are obsolete plugins.
>>
>>GoPlugin and LoadGoAssoc are current.
>>
>>I'll see if we can get this directory cleaned up.
>>
>>What is it you are trying to do?
>>
>>steve
>>
>>fed...@bi... wrote:
>>
>>    
>>
>>>Of course!
>>>
>>>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc
>>>
>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>>>contains: /opt/gus_home/lib/perl
>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm
>>>line 24.
>>>Compilation failed in require at (eval 3) line 1.
>>>STACK TRACE
>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>       GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>line 688
>>>       GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>line 479
>>>       GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>line 289
>>>       GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>>line 198
>>>       GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)')
>>>called at /opt/gus_home/bin/ga line 11
>>>
>>>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions
>>>
>>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>>>contains: /opt/gus_home/lib/perl
>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>>12.
>>>BEGIN failed--compilation aborted at
>>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>>12.
>>>Compilation failed in require at (eval 3) line 1.
>>>STACK TRACE
>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>
>>>(..than the same as before)
>>>
>>>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions
>>>
>>>ERROR: Can't locate object method "new" via package
>>>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1.
>>>STACK TRACE
>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>locate object method "new" via package "GUS::GOPredict...') called at
>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>
>>>(..than the same as before)
>>>
>>>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>>
>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>>contains: /opt/gus_home/lib/perl
>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>BEGIN failed--compilation aborted at
>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>Compilation failed in require at (eval 3) line 1.
>>>STACK TRACE
>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>
>>>(..than the same as before)
>>>
>>>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>>
>>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>>contains: /opt/gus_home/lib/perl
>>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>BEGIN failed--compilation aborted at
>>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>>Compilation failed in require at (eval 3) line 1.
>>>STACK TRACE
>>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>>
>>>(..than the same as before)
>>>
>>>Thanks, Federica
>>>
>>>
>>>
>>>      
>>>
>>>>can you send the error messages?
>>>>
>>>>thanks
>>>>steve
>>>>
>>>>fed...@bi... wrote:
>>>>
>>>>
>>>>
>>>>        
>>>>
>>>>>Hi guys! I'm registering the plugin class name with ga; I had some
>>>>>problems because ga can't find some perl files:
>>>>>AASequenceGOFunction.pm,
>>>>>ArrayControlLoader.pm, AssayAnalysis.pm.
>>>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate
>>>>>object method "new" via package
>>>>>"GUS::GOPredict::Plugin::MakeGoPredictions".
>>>>>Do you know why?? I think the building process has been correctly
>>>>>made...
>>>>>Thanks
>>>>>Federica
>>>>>
>>>>>
>>>>>
>>>>>-------------------------------------------------------
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>>>>>_______________________________________________
>>>>>Gusdev-gusdev mailing list
>>>>>Gus...@li...
>>>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev
>>>>>
>>>>>
>>>>>
>>>>>
>>>>>          
>>>>>
>>>>-------------------------------------------------------
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>>>>Read honest & candid reviews on hundreds of IT Products from real users.
>>>>Discover which products truly live up to the hype. Start reading now.
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>>>>
>>>>
>>>>        
>>>>
>>>
>>>      
>>>
>
>  
>