From: <fed...@bi...> - 2005-02-16 13:39:17
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I'm following the "Fidel and Sucheta's installation guide" and at this moment I'm registering all the Plugin groups. Now I'm working to build the GUS platform. For now I have no other aim. Both GoPlugin and LoadGoAssoc were correctly registered. So what do you think I could do? Federica > federica- > > the problem, i believe, is that these are obsolete plugins. > > GoPlugin and LoadGoAssoc are current. > > I'll see if we can get this directory cleaned up. > > What is it you are trying to do? > > steve > > fed...@bi... wrote: > >>Of course! >> >>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc >> >>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC >>contains: /opt/gus_home/lib/perl >>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm >>line 24. >>Compilation failed in require at (eval 3) line 1. >>STACK TRACE >>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at >>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >> GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>line 688 >> GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>line 479 >> GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>line 289 >> GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc') >>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm >>line 198 >> GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)') >>called at /opt/gus_home/bin/ga line 11 >> >>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions >> >>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC >>contains: /opt/gus_home/lib/perl >>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line >>12. >>BEGIN failed--compilation aborted at >>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line >>12. >>Compilation failed in require at (eval 3) line 1. >>STACK TRACE >>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at >>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >> >>(..than the same as before) >> >>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions >> >>ERROR: Can't locate object method "new" via package >>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1. >>STACK TRACE >>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>locate object method "new" via package "GUS::GOPredict...') called at >>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >> >>(..than the same as before) >> >>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader >> >>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC >>contains: /opt/gus_home/lib/perl >>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>BEGIN failed--compilation aborted at >>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>Compilation failed in require at (eval 3) line 1. >>STACK TRACE >>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at >>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >> >>(..than the same as before) >> >>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader >> >>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC >>contains: /opt/gus_home/lib/perl >>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0 >>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl >>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi >>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at >>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>BEGIN failed--compilation aborted at >>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22. >>Compilation failed in require at (eval 3) line 1. >>STACK TRACE >>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t >>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at >>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254 >> >>(..than the same as before) >> >>Thanks, Federica >> >> >> >>>can you send the error messages? >>> >>>thanks >>>steve >>> >>>fed...@bi... wrote: >>> >>> >>> >>>>Hi guys! I'm registering the plugin class name with ga; I had some >>>>problems because ga can't find some perl files: >>>> AASequenceGOFunction.pm, >>>>ArrayControlLoader.pm, AssayAnalysis.pm. >>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate >>>>object method "new" via package >>>>"GUS::GOPredict::Plugin::MakeGoPredictions". >>>>Do you know why?? I think the building process has been correctly >>>> made... >>>>Thanks >>>>Federica >>>> >>>> >>>> >>>>------------------------------------------------------- >>>>SF email is sponsored by - The IT Product Guide >>>>Read honest & candid reviews on hundreds of IT Products from real >>>> users. >>>>Discover which products truly live up to the hype. Start reading now. >>>>http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click >>>>_______________________________________________ >>>>Gusdev-gusdev mailing list >>>>Gus...@li... >>>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >>>> >>>> >>>> >>>> >>>------------------------------------------------------- >>>SF email is sponsored by - The IT Product Guide >>>Read honest & candid reviews on hundreds of IT Products from real users. >>>Discover which products truly live up to the hype. Start reading now. >>>http://ads.osdn.com/?ad_id=6595&alloc_id=14396&op=click >>>_______________________________________________ >>>Gusdev-gusdev mailing list >>>Gus...@li... >>>https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev >>> >>> >>> >> >> >> > |