Re: [Gusdev-gusdev] ragistering plugin

[<fed...@bi...>]

I'm following the "Fidel and Sucheta's installation guide" and at this
moment I'm registering all the Plugin groups. Now I'm working to build the
GUS platform. For now I have no other aim.
Both GoPlugin and LoadGoAssoc were correctly registered.
So what do you think I could do?
Federica


> federica-
>
> the problem, i believe, is that these are obsolete plugins.
>
> GoPlugin and LoadGoAssoc are current.
>
> I'll see if we can get this directory cleaned up.
>
> What is it you are trying to do?
>
> steve
>
> fed...@bi... wrote:
>
>>Of course!
>>
>>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc
>>
>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>>contains: /opt/gus_home/lib/perl
>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm
>>line 24.
>>Compilation failed in require at (eval 3) line 1.
>>STACK TRACE
>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>        GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>line 688
>>        GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>line 479
>>        GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>line 289
>>        GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>>line 198
>>        GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)')
>>called at /opt/gus_home/bin/ga line 11
>>
>>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions
>>
>>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>>contains: /opt/gus_home/lib/perl
>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>12.
>>BEGIN failed--compilation aborted at
>>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>>12.
>>Compilation failed in require at (eval 3) line 1.
>>STACK TRACE
>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>
>>(..than the same as before)
>>
>>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions
>>
>>ERROR: Can't locate object method "new" via package
>>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1.
>>STACK TRACE
>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>locate object method "new" via package "GUS::GOPredict...') called at
>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>
>>(..than the same as before)
>>
>>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>
>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>contains: /opt/gus_home/lib/perl
>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>BEGIN failed--compilation aborted at
>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>Compilation failed in require at (eval 3) line 1.
>>STACK TRACE
>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>
>>(..than the same as before)
>>
>>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>>
>>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>>contains: /opt/gus_home/lib/perl
>>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>BEGIN failed--compilation aborted at
>>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>>Compilation failed in require at (eval 3) line 1.
>>STACK TRACE
>>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>>
>>(..than the same as before)
>>
>>Thanks, Federica
>>
>>
>>
>>>can you send the error messages?
>>>
>>>thanks
>>>steve
>>>
>>>fed...@bi... wrote:
>>>
>>>
>>>
>>>>Hi guys! I'm registering the plugin class name with ga; I had some
>>>>problems because ga can't find some perl files:
>>>> AASequenceGOFunction.pm,
>>>>ArrayControlLoader.pm, AssayAnalysis.pm.
>>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate
>>>>object method "new" via package
>>>>"GUS::GOPredict::Plugin::MakeGoPredictions".
>>>>Do you know why?? I think the building process has been correctly
>>>> made...
>>>>Thanks
>>>>Federica
>>>>
>>>>
>>>>
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>>>>
>>>>
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>>
>>
>>
>