Re: [Gusdev-gusdev] ragistering plugin

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federica-

the problem, i believe, is that these are obsolete plugins.  

GoPlugin and LoadGoAssoc are current.

I'll see if we can get this directory cleaned up.

What is it you are trying to do?

steve

fed...@bi... wrote:

>Of course!
>
>1) ga +create GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc
>
>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>contains: /opt/gus_home/lib/perl
>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/CopyAASeqGoFuncToProtGoFunc.pm
>line 24.
>Compilation failed in require at (eval 3) line 1.
>STACK TRACE
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>        GUS::PluginMgr::GusApplication::newFromPluginName('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>line 688
>        GUS::PluginMgr::GusApplication::create_or_update_implementation('GUS::PluginMgr::GusApplication=HASH(0x804d054)',0,'GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>line 479
>        GUS::PluginMgr::GusApplication::doMajorMode_Create('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>line 289
>        GUS::PluginMgr::GusApplication::doMajorMode('GUS::PluginMgr::GusApplication=HASH(0x804d054)','GUS::GOPredict::Plugin::CopyAASeqGoFuncToProtGoFunc')
>called at /opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm
>line 198
>        GUS::PluginMgr::GusApplication::parseAndRun('GUS::PluginMgr::GusApplication=HASH(0x804d054)','ARRAY(0x80606d0)')
>called at /opt/gus_home/bin/ga line 11
>
>2) ga +create GUS::GOPredict::Plugin::DeleteGoPredictions
>
>ERROR: Can't locate Objects/GUSdev/AASequenceGOFunction.pm in @INC (@INC
>contains: /opt/gus_home/lib/perl
>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>12.
>BEGIN failed--compilation aborted at
>/opt/gus_home/lib/perl/GUS/GOPredict/Plugin/DeleteGoPredictions.pm line
>12.
>Compilation failed in require at (eval 3) line 1.
>STACK TRACE
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>locate Objects/GUSdev/AASequenceGOFunction.pm in @INC ...') called at
>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>
>(..than the same as before)
>
>3) ga +create GUS::GOPredict::Plugin::MakeGoPredictions
>
>ERROR: Can't locate object method "new" via package
>"GUS::GOPredict::Plugin::MakeGoPredictions" at (eval 3) line 1.
>STACK TRACE
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>locate object method "new" via package "GUS::GOPredict...') called at
>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>
>(..than the same as before)
>
>4) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>
>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>contains: /opt/gus_home/lib/perl
>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>BEGIN failed--compilation aborted at
>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>Compilation failed in require at (eval 3) line 1.
>STACK TRACE
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>
>(..than the same as before)
>
>5) ga +create GUS::RAD::Plugin::AnalysisResultLoader
>
>ERROR: Can't locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC
>contains: /opt/gus_home/lib/perl
>/usr/lib/perl5/5.8.0/i386-linux-thread-multi /usr/lib/perl5/5.8.0
>/usr/lib/perl5/site_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/site_perl/5.8.0 /usr/lib/perl5/site_perl
>/usr/lib/perl5/vendor_perl/5.8.0/i386-linux-thread-multi
>/usr/lib/perl5/vendor_perl/5.8.0 /usr/lib/perl5/vendor_perl .) at
>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>BEGIN failed--compilation aborted at
>/opt/gus_home/lib/perl/GUS/RAD/Plugin/AnalysisResultLoader.pm line 22.
>Compilation failed in require at (eval 3) line 1.
>STACK TRACE
>GUS::PluginMgr::Plugin::error('GUS::PluginMgr::GusApplication=HASH(0x804d054)','Can\'t
>locate GUS/Model/RAD3/AssayAnalysis.pm in @INC (@INC c...') called at
>/opt/gus_home/lib/perl/GUS/PluginMgr/GusApplication.pm line 254
>
>(..than the same as before)
>
>Thanks, Federica
>
>  
>
>>can you send the error messages?
>>
>>thanks
>>steve
>>
>>fed...@bi... wrote:
>>
>>    
>>
>>>Hi guys! I'm registering the plugin class name with ga; I had some
>>>problems because ga can't find some perl files: AASequenceGOFunction.pm,
>>>ArrayControlLoader.pm, AssayAnalysis.pm.
>>>And olso in the MakeGoPredictions plugin I had an error: Can't locate
>>>object method "new" via package
>>>"GUS::GOPredict::Plugin::MakeGoPredictions".
>>>Do you know why?? I think the building process has been correctly made...
>>>Thanks
>>>Federica
>>>
>>>
>>>
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>>>
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>>Read honest & candid reviews on hundreds of IT Products from real users.
>>Discover which products truly live up to the hype. Start reading now.
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>>    
>>
>
>  
>