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Re: [Gusdev-gusdev] parseBlastFilesForSimilarity.pl
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From: Steve F. <sfi...@pc...> - 2005-02-11 15:05:00
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what are you planning on blasting? steve Alberto Davila wrote: >Hi Steve, > >On Fri, 2005-02-11 at 08:56 -0500, Steve Fischer wrote: > > >>poliana- >> >>oops, the usage statement for LoadBlastSimFast is out of date. it >>should instruct you to use the blastSimilarity command. >> >>LoadBlastSimFast makes a big assumption, that the subject and query >>sequences are in GUS, and their def. lines have GUS primary keys. >> >>Are your sequences already loaded into GUS? >> >> > >They are not, there would be any howto/tips for that plugin ? We will >certainly need a plugin to load "Interpro" and "ORF finding" results >into GUS... If they are not available, then maybe we will have to write >them ... > >Cheers, Alberto > > > >>steve >> >> >> >>Poliana Mateus wrote: >> >> >> >>>Hello all, >>> >>>Where can find the script parseBlastFilesForSimilarity.pl?? >>>I'm trying to run LoadBlastSimFast... >>> >>>Poliana >>> >>> >>> >>> |
