Re: [Gusdev-gusdev] ReviewStatus issues

[Steve F. <sfi...@pc...>]

josef-

a few things.

yes, that attribute will be in 3.5.

patching it is kind of a pain.

i'm wondering if your use case might be better satisfied by using 
prediction algorithm or the external_database_release_id to track who 
made the feature.  (conceptually review status has to do with what the 
curators have done to the feature).

if you still want to patch it, let me know and we'll describe how.

steve

Josef Jurek wrote:

>Steve Fischer <sfi...@pc...> writes:
>  
>
>>I am discovering other controlled vocab issues.
>>
>>First, ReviewStatus.
>>    
>>
>
>Speaking of ReviewStatus, I wrote concerning this
>field and the DoTS.NAFeature table a few days ago.
>
>Will this field be present in the NAFeature table
>in version 3.5?  Is it there now in version 3.2?
>
>
>  
>
>>The upshot is that i don't think the GUS install should provide values
>>for ReviewStatus.   It should be optional and site specific.
>>    
>>
>
>I completely agree. See below.
>
>Thanks, Josef
>
>
>My previous mail:
>=>
>=>  From: Josef Jurek <ju...@cs...>
>=>  To: gus...@li...
>=>  Message-Id: <200...@ga...>
>=>  Subject: [Gusdev-gusdev] Another necessary field
>=>  Date: Tue,  1 Feb 2005 17:35:11 -0600 (CST)
>=>
>=>
>=>  According to the schema browser, DoTS.NAFeature has
>=>  the field review_status_id which of course
>=>  points to a row in the table SRes.ReviewStatus.
>=>  However, in my installation of GUS, schema version 3.0,
>=>  DoTS.NAFeature lacks this field.
>=>
>=>  Such a thing would be very useful to have to distinguish
>=>  between the annotation of the same sequence by
>=>  different organizations.
>=>
>=>  In fact, I could use this field right now.  Does
>=>  schema version 3.2 have this field?  If so,
>=>  can someone suggest a patch/rebuild method
>=>  so that I could at least upgrade the NAFeature
>=>  table in my installation?
>=>
>=>  Thanks, Josef
>=>
>
>
>
>
>Josef Jurek, Ph.D.
>
>Daphne Preuss Laboratory
>Molecular Genetics and Cell Biology
>The University of Chicago
>ju...@cs...
>
>voice: (773) 834-3985
>fax:   (773) 702-6648
>
>  
>