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RE: [Gusdev-gusdev] Problem building WDK on Fedora
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From: davila <da...@io...> - 2005-01-26 20:18:52
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Hi Dave,
Please have a look on what we have done...
Errors description when running "wdkQuery":
In the "PostgreSQL.java" file we edited:
line 117:
String alterSql =3D "alter table " + tableName + " add i varchar(100)";
We changed "number(12)" to "varchar(100)" because in the next line it =
makes an update and try to insert characters in that field that was =
"number(12)" then it was only accepting numbers.
Error:
[poliana@phytomonas gus_home]$ wdkQuery -model toyModel -query
RnaIds.ByDbESTLib -params NumEstLibs 6 AssemblyConsistency 80
Failed executing sql:
update query_result_2 set i =3D ('query_result_2_sq')
=20
org.gusdb.wdk.model.WdkModelException:
org.postgresql.util.PSQLException: ERROR: invalid input syntax for
type numeric: " query_result_2_sq"
=20
org.gusdb.wdk.model.WdkModelException:
org.postgresql.util.PSQLException: ERROR: invalid input syntax for
type numeric: " query_result_2_sq"
-------------------------------------------------------------------------=
---------------------------------------------
Yet in the "PostgreSQL.java" file we changed line 56:
=20
return " select LOCALTIMESTAMP(0)"; to:
return "LOCALTIMESTAMP(0)";
The "select" was removed then postgresql can recognize that.
-------------------------------------------------------------------------=
---------------------------------------------
In "ResultFactory.java", lines 312 until 346:
In the following error, it assumes the "nextID" variable as being
"gus.QueryInstance_pkseq" and returns the error because this field =
should receive a numeric value: we changed the variable to a numeric =
value (in the script) to test and the data were inserted with success.
[poliana@phytomonas gus_home]$ wdkQuery -model toyModel -query
RnaIds.ByDbESTLib -params NumEstLibs 6 AssemblyConsistency 80
Failed executing sql:
insert into gus.QueryInstance (query_instance_id, query_name, cached,
session_id, dataset_name, start_time, param0, param1) values
(gus.QueryInstance_pkseq, 'RnaIds.ByDbESTLib', 1, null, null, now(),
'6', '80')
=20
org.gusdb.wdk.model.WdkModelException:
org.postgresql.util.PSQLException: ERROR: relation "gus" does not
exist
=20
org.gusdb.wdk.model.WdkModelException:
org.postgresql.util.PSQLException: ERROR: relation "gus" does not
exist
-------------------------------------------------------------------------=
----------------------------------
After debugging that, we got this:
[poliana@phytomonas gus_home]$ wdkQuery -model toyModel -query
RnaIds.ByDbESTLib -params NumEstLibs 6 AssemblyConsistency 80
92484435 query_result_2_sq
92484471 query_result_2_sq
92484523 query_result_2_sq
92484578 query_result_2_sq
92484601 query_result_2_sq
92484678 query_result_2_sq
92484682 query_result_2_sq
92484686 query_result_2_sq
92484695 query_result_2_sq
92484703 query_result_2_sq
92484708 query_result_2_sq
92484710 query_result_2_sq
92484731 query_result_2_sq
92484741 query_result_2_sq
92484752 query_result_2_sq
92484755 query_result_2_sq
92484758 query_result_2_sq
92484764 query_result_2_sq
92484767 query_result_2_sq
92484768 query_result_2_sq
92484772 query_result_2_sq
92484779 query_result_2_sq
92484780 query_result_2_sq
92484801 query_result_2_sq
92484835 query_result_2_sq
92484836 query_result_2_sq
101853404 query_result_2_sq
So... is the latter the expected output for "wdkQuery" ? If so, then =
looks like we have lot of debugging to do, if not maybe we are just not =
invoking/using the commands properly... as usual, any further =
suggestions are greatly appreciated ;-)
Alberto
-----Original Message-----
From: Dave Barkan [mailto:db...@pc...]
Sent: Tue 1/25/2005 2:05 PM
To: davila
Cc: Steve Fischer; Michael Saffitz; marc jackson; =
gus...@li...; yo...@de...; =
pol...@gm...; Linair Maria Campos; Pablo Mendes
Subject: Re: [Gusdev-gusdev] Problem building WDK on Fedora
The wdkXml command is working fine. That means that the provided model=20
has no errors in it (thank goodness).
The problem with the following command
> [poliana@phytomonas gus_home]$ wdkQuery -model toyModel -query
> RnaIds.ByDbESTLib -params NumEstLibs 6 ApiTaxon "Neospora caninum"
is that ApiTaxon is no longer a paramter used in that query (as the=20
message indicates). You probably took that command from our wdk=20
wiki documentation; apparently the command is out of date and will be =
changed. Sorry about=20
that! Try running the following command to test wdkQuery:
% wdkQuery -model toyModel -query RnaIds.ByDbESTLib
-params NumEstLibs 6 AssemblyConsistency 80
> Also, may we ask for any further example on how to use the WDK
> utilities ?
Examples to use the other wdk utilities are provided on the wdk wiki. I =
checked them and they are up to date and should work. If you need the=20
url for that, here it is:
http://www.gusdb.org/wiki/index.php/Gus%20Wdk%201.1
Let me know if there is anything else.
Thanks,
Dave
>
> Thanks, Alberto
>
>
>
> On Thu, 2005-01-20 at 17:45 -0500, Dave Barkan wrote:
>> Hey Alberto,
>>
>> Sorry for the delay on this; it is an issue with the Regression test =
which
>> we supply with the WDK project. You might be right that it is a =
problem
>> with the path. I will take a look.
>>
>> For now, failures in the regression test do not necessarily indicate =
a
>> critical issue with your installation of the WDK, especially if the
>> wdkSanity test works. However, the regression test does need some
>> tweaking to account for recent changes to expected behavior, so I =
will
>> check it out and report back.
>>
>> Thanks,
>> Dave
>>
>> On Tue, 18 Jan 2005, Alberto Davila wrote:
>>
>>> Thanks Steve !
>>>
>>> We managed to pass that error.
>>>
>>> Now, when trying "wdkRegressionTest":
>>>
>>> [poliana@phytomonas gus_home]$ wdkRegressionTest
>>> =
--commandListFile=3D/usr/local/GUS/gus_home/data/WDKToySite/Model/regress=
ionTest/sampleRegressionTestCommands
>>>
>>> running regression test newCacheTest
>>>
>>> sh: line 1: /newCacheTest.out: Permission denied
>>> diff: /newCacheTest.out: No such file or directory
>>> diff:
>>> =
/usr/local/GUS/gus_home/data/WDK/ToyModel/regressionTest/expectedResult/n=
ewCacheTest.out:
>>> No such file or directory
>>>
>>> Error! Test newCacheTest failed!
>>> The observed result of the test was different than the expected =
result
>>> of a test previously run.
>>> To see the difference, run diff /newCacheTest.out
>>> =
/usr/local/GUS/gus_home/data/WDK/ToyModel/regressionTest/expectedResult/n=
ewCacheTest.out
>>>
>>> Received error in critical test newCacheTest. Ending regression =
test
>>> at /usr/local/GUS/gus_home/bin/wdkRegressionTest line 115, <GEN0> =
line
>>> 3.
>>>
>>> Is the path
>>> =
"/usr/local/GUS/gus_home/data/WDK/ToyModel/regressionTest/expectedResult/=
newCacheTest.out"
>>> correct ? Just realized we have this PATH:
>>> "/usr/local/GUS/gus_home/data/WDKToySite/Model/regressionTest" =
instead.
>>>
>>> Regards, Alberto
>>>
>>>
>>>
>>> At 20:44 17/1/2005, Steve Fischer wrote:
>>>> i think the problem is that we have the oracle driver hard coded.
>>>>
>>>> take a look in $PROJECT_HOME/WDK/Model/bin/wdkCache.
>>>>
>>>> my $cmd =3D "java -Djdbc.drivers=3Doracle.jdbc.driver.OracleDriver
>>>> -DconfigDir=3D$GUS_HOME/config -DcmdName=3DwdkCache -classpath =
$CLASSPATH
>>>> org.gusdb.wdk.model.ResultFactory $args";
>>>>
>>>> as a workaround, in the files in that directory, change to postgres
>>>> drivers.
>>>>
>>>> we'll make it configurable.
>>>>
>>>> you'll also need to write a new class for postrgres.
>>>>
>>>> the Oracle version is:
>>>>
>>>> =
$PROJECT_HOME/WDK/Model/src/java/org/gusdb/wdk/model/implementation/Oracl=
e.java
>>>>
>>>> you'll need to make a similar class for postgres. then, in the =
file
>>>> $PROJECT_HOME/WDKToySite/Model/config/toyModel-config.xml
>>>>
>>>> you'll need to refer to that class:
>>>> <modelConfig login=3D"yourLoginHere"
>>>> password=3D"yourPasswordHere"
>>>> connectionUrl=3D"yourConnectionUrlHere"
>>>> queryInstanceTable=3D"QueryInstance"
>>>> maxQueryParams=3D"50"
>>>> platformClass=3D"org.gusdb.wdk.model.implementation.Oracle"
>>>> initialSize=3D"3"
>>>> maxActive=3D"20"
>>>> maxIdle=3D"3"
>>>> minIdle=3D"3"
>>>> maxWait=3D"500"/>
>>>>
>>>>
>>>>
>>>> Alberto Davila wrote:
>>>>
>>>>> Hi Dave,
>>>>>
>>>>> You are right... that output seem to be fine... however we cannot =
use WDK,
>>>>> here are more logs:
>>>>>
>>>>> [poliana@phytomonas gus_home]$ wdkCache -model toyModel -new
>>>>>
>>>>> Making cache table gus.QueryInstance
>>>>>
>>>>> Failed executing sql:
>>>>> create table gus.QueryInstance (query_instance_id number(12) not =
null,
>>>>> query_name varchar2(100) not null, cached number(1) not
>>>>> null,result_table varchar2(30), start_time date not null, end_time
>>>>> date, dataset_name varchar2(100), session_id varchar2(50), param0
>>>>> varchar2(200), param1 varchar2(200), param2 varchar2(200), param3
>>>>> varchar2(200), param4 varchar2(200), param5 varchar2(200), param6
>>>>> varchar2(200), param7 varchar2(200), param8 varchar2(200), param9
>>>>> varchar2(200), param10 varchar2(200), param11 varchar2(200), =
param12
>>>>> varchar2(200), param13 varchar2(200), param14 varchar2(200), =
param15
>>>>> varchar2(200), param16 varchar2(200), param17 varchar2(200), =
param18
>>>>> varchar2(200), param19 varchar2(200), param20 varchar2(200), =
param21
>>>>> varchar2(200), param22 varchar2(200), param23 varchar2(200), =
param24
>>>>> varchar2(200), param25 varchar2(200), param26 varchar2(200), =
param27
>>>>> varchar2(200), param28 varchar2(200), param29 varchar2(200), =
param30
>>>>> varchar2(200), param31 varchar2(200), param32 varchar2(200), =
param33
>>>>> varchar2(200), param34 varchar2(200), param35 varchar2(200), =
param36
>>>>> varchar2(200), param37 varchar2(200), param38 varchar2(200), =
param39
>>>>> varchar2(200), param40 varchar2(200), param41 varchar2(200), =
param42
>>>>> varchar2(200), param43 varchar2(200), param44 varchar2(200), =
param45
>>>>> varchar2(200), param46 varchar2(200), param47 varchar2(200), =
param48
>>>>> varchar2(200), param50 varchar2(200))
>>>>>
>>>>> FAILED
>>>>>
>>>>> org.gusdb.wdk.model.WdkModelException: java.sql.SQLException: No =
suitable
>>>>> driver
>>>>> at
>>>>> =
org.gusdb.wdk.model.ResultFactory.createCache(ResultFactory.java:136)
>>>>> at =
org.gusdb.wdk.model.ResultFactory.main(ResultFactory.java:524)
>>>>> Caused by: java.sql.SQLException: No suitable driver
>>>>> at =
java.sql.DriverManager.getConnection(DriverManager.java:532)
>>>>> at =
java.sql.DriverManager.getConnection(DriverManager.java:171)
>>>>> at
>>>>> =
org.apache.commons.dbcp.DriverManagerConnectionFactory.createConnection(D=
riverManagerConnectionFactory.java:94)
>>>>> at
>>>>> =
org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConn=
ectionFactory.java:300)
>>>>> at
>>>>> =
org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObject=
Pool.java:816)
>>>>> at
>>>>> =
org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource=
.java:140)
>>>>> at
>>>>> =
org.gusdb.wdk.model.implementation.SqlUtils.execute(SqlUtils.java:206)
>>>>> at
>>>>> =
org.gusdb.wdk.model.ResultFactory.createCache(ResultFactory.java:127)
>>>>> ... 1 more
>>>>>
>>>>>
>>>>> We have the Postgres JDBC installed and its PATH (export
>>>>> CLASSPATH=3D/usr/local/GUS/gus_home/lib/java/pg74.215.jdbc3.jar) =
properly
>>>>> set (such as stated in the manual, we have choosen the JDBC =
version based
>>>>> on jsdk and postgres installed versions), then decided to make a =
test with
>>>>> the JDBC (just in case...) :
>>>>>
>>>>> [poliana@phytomonas gus_home]$ java -classpath . HelloPostgresql =
banco
>>>>> user 'senha'
>>>>> hello
>>>>>
>>>>> Connection to PostgreSQL 7.4.6 successful.
>>>>>
>>>>> Executing this command: create table jdbc_demo (code int, text
>>>>> varchar(20))
>>>>>
>>>>> Executing this command: insert into jdbc_demo values (1,'One')
>>>>>
>>>>> Executing this command twice: insert into jdbc_demo values =
(3,'Four')
>>>>>
>>>>> Executing this command: update jdbc_demo set text =3D 'Three' =
where code =3D 3
>>>>>
>>>>> 2 rows were update by this statement
>>>>>
>>>>>
>>>>>
>>>>> Now demostrating a prepared statement...
>>>>> The Statement looks like this: insert into jdbc_demo values (?,?)
>>>>>
>>>>> Looping three times filling in the fields...
>>>>>
>>>>> 10...
>>>>>
>>>>> 11...
>>>>>
>>>>> 12...
>>>>>
>>>>> Now executing the command: select * from jdbc_demo
>>>>> code =3D 1; text =3D One
>>>>>
>>>>> code =3D 3; text =3D Three
>>>>>
>>>>> code =3D 3; text =3D Three
>>>>>
>>>>> code =3D 10; text =3D HiHo
>>>>>
>>>>> code =3D 11; text =3D HiHo
>>>>>
>>>>> code =3D 12; text =3D HiHo
>>>>>
>>>>> Executing this command: drop table jdbc_demo
>>>>>
>>>>> Could it be that the command "wdkCache -model toyModel -new" is =
trying to
>>>>> build the WDK based on the "Oracle version of GUS" ? We are using =
the
>>>>> Postgres version built with the scripts from Jeetendra...
>>>>>
>>>>> Thanks in advance for any further help ;-)
>>>>>
>>>>> Cheers, Alberto
>>>>>
>>>>>
>>>>>
>>>>> At 12:50 13/1/2005, Dave Barkan wrote:
>>>>>
>>>>>> Hi Alberto,
>>>>>>
>>>>>> The output that you sent is actually fine! There are no error =
messages
>>>>>> that I can see, and the output indicates that you built =
successfully.
>>>>>> The "no existing files, doing nothing" message is a simple =
statement that
>>>>>> shouldn't concern you.
>>>>>>
>>>>>> Are there any other symptoms that lead you to believe there is a =
problem
>>>>>> with the build?
>>>>>>
>>>>>> Dave
>>>>>>
>>>>>> On Thu, 13 Jan 2005, Alberto Davila wrote:
>>>>>>
>>>>>>> HI Dave,
>>>>>>>
>>>>>>> Thanks...
>>>>>>>
>>>>>>> I think we made a mistake trying to build "GUS" instead the
>>>>>>> "WDKToySite", then we started again, have a look:
>>>>>>>
>>>>>>> [poliana@phytomonas gus_home]$ build WDKToySite install -append
>>>>>>>
>>>>>>> ant -f /usr/local/GUS/project_home/install/build.xml install
>>>>>>> -Dproj=3DWDKToySite -DtargetDir=3D/usr/local/GUS/gus_home =
-Dcomp=3D
>>>>>>> -DprojectsDir=3D/usr/local/GUS/project_home -Dappend=3Dtrue =
-logger
>>>>>>> org.apache.tools.ant.NoBannerLogger | grep ']'
>>>>>>>
>>>>>>> [echo] .
>>>>>>> [echo] Installing WDK/Model
>>>>>>> [copy] Copying 13 files to /usr/local/GUS/gus_home/bin
>>>>>>> [mkdir] Created dir: /usr/local/GUS/gus_home/lib/xml
>>>>>>> [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/xml
>>>>>>> [mkdir] Created dir: /usr/local/GUS/gus_home/lib/rng
>>>>>>> [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/rng
>>>>>>> [mkdir] Created dir: =
/usr/local/GUS/gus_home/lib/perl/WDK/Model
>>>>>>> [copy] Copying 24 files to
>>>>>>> /usr/local/GUS/gus_home/lib/perl/WDK/Model
>>>>>>> [copy] Copying 10 files to /usr/local/GUS/gus_home/lib/java
>>>>>>> [mkdir] Created dir: /usr/local/GUS/gus_home/doc/WDK/Model
>>>>>>> [copy] Copying 9 files to =
/usr/local/GUS/gus_home/doc/WDK/Model
>>>>>>> [jar] Building jar: =
/usr/local/GUS/gus_home/lib/java/WDK-Model.jar
>>>>>>> [echo] .
>>>>>>> [echo] IMPORTANT REMINDER: If you have not already done so,
>>>>>>> please copy any .jar needed for database connectivity (such as
>>>>>>> oracle-classes12.jar) into /usr/local/GUS/gus_home/lib/java. =
The WDK
>>>>>>> does not supply these. See the installation instructions =
available at
>>>>>>> www.gusdb.org/wdk for details.
>>>>>>> [echo] .
>>>>>>> [echo] .
>>>>>>> [echo] Installing WDK/Controller
>>>>>>> [copy] Copying 3 files to /usr/local/GUS/gus_home/lib/java
>>>>>>> [jar] Building jar:
>>>>>>> /usr/local/GUS/gus_home/lib/java/WDK-Controller.jar
>>>>>>> [echo] .
>>>>>>> [echo] Installing WDK/View
>>>>>>> [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/java
>>>>>>> [concat] No existing files and no nested text, doing nothing
>>>>>>> [echo] .
>>>>>>> [echo] Installing WDKToySite/Model
>>>>>>> [copy] Copying 5 files to /usr/local/GUS/gus_home/config
>>>>>>> [mkdir] Created dir: =
/usr/local/GUS/gus_home/doc/WDKToySite/Model
>>>>>>> [copy] Copying 1 file to
>>>>>>> /usr/local/GUS/gus_home/doc/WDKToySite/Model
>>>>>>> [mkdir] Created dir: =
/usr/local/GUS/gus_home/data/WDKToySite/Model
>>>>>>> [copy] Copying 13 files to
>>>>>>> /usr/local/GUS/gus_home/data/WDKToySite/Model
>>>>>>> [concat] No existing files and no nested text, doing nothing
>>>>>>>
>>>>>>> Here is our ".bashrc" file:
>>>>>>>
>>>>>>> [root@phytomonas poliana]# more .bashrc
>>>>>>> # .bashrc
>>>>>>>
>>>>>>> PATH=3D$PATH:/usr/local/pgsql/bin; export PATH
>>>>>>> PATH=3D$PATH:/usr/java/j2sdk1.4.2_06/bin; export PATH
>>>>>>> PATH=3D$PATH:/usr/local/apache-ant-1.6.2/bin; export PATH
>>>>>>> export ANT_HOME=3D/usr/local/apache-ant-1.6.2
>>>>>>> export JAVA_HOME=3D/usr/java/j2sdk1.4.2_06
>>>>>>> export CATALINA_HOME=3D/usr/local/jakarta-tomcat-5.0.28
>>>>>>> export GUS_HOME=3D/usr/local/GUS/gus_home
>>>>>>> export PROJECT_HOME=3D/usr/local/GUS/project_home
>>>>>>> export GUS_CONFIG_FILE=3D$GUS_HOME/.gus.properties
>>>>>>> =
PATH=3D$GUS_HOME/bin:$PROJECT_HOME/install/bin:$ANT_HOME/bin:$PATH; =
export
>>>>>>> PATH
>>>>>>> export PERL5LIB=3D/usr/local/GUS/gus_home/lib/perl
>>>>>>>
>>>>>>> Here is the software/system we are using:
>>>>>>>
>>>>>>> Ant: apache-ant-1.6.2
>>>>>>> TomCat: jakarta-tomcat-5.0.28
>>>>>>> Java: Java(TM) 2 Runtime Environment, Standard Edition (build
>>>>>>> 1.4.2_06-b03)
>>>>>>> Java HotSpot(TM) Client VM (build 1.4.2_06-b03, mixed mode)
>>>>>>> Postgres: postgresql-7.4.6
>>>>>>> Perl: 5.8.3
>>>>>>> Fedora Core 1
>>>>>>> Kernel: 2.4.22-1.2199.nptl
>>>>>>>
>>>>>>> and, we are using the scripts for the "PostgreSQL" version =
posted by
>>>>>>> Jeetendra (by the way, Jeetendra plugins are working fine, =
"SubmitRow"
>>>>>>> went OK then just using "LoadTaxon", the load iof the latter is =
taking
>>>>>>> more than 48 hours ... and still running...)
>>>>>>>
>>>>>>> any further suggestions to debug the WDK install ?
>>>>>>>
>>>>>>> Thanks, Alberto
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> At 13:49 10/1/2005, Dave Barkan wrote:
>>>>>>>
>>>>>>>> Hello,
>>>>>>>> This error message is usually indicative of the build system =
being
>>>>>>>> unable to connect to your database instance.
>>>>>>>> Make sure that you have configured your $GUS_CONFIG_FILE and =
your
>>>>>>>> environment variables as detailed in steps 5 and 9 of the GUS
>>>>>>>> installation instructions at
>>>>>>>> http://www.gusdb.org/documentation/install-setup.html
>>>>>>>> Off the top of my head, that is the most likely solution to =
your
>>>>>>>> problem, but if that doesn't work, I would suggest asking your =
DBA if
>>>>>>>> they can think of anything regarding your local connection and =
database
>>>>>>>> instance.
>>>>>>>> Dave
>>>>>>>> On Fri, 7 Jan 2005, davila wrote:
>>>>>>>>
>>>>>>>>> Hi Marc,
>>>>>>>>> We just tried to install the WDK 1.1. by using:
>>>>>>>>> build GUS install -append
>>>>>>>>> then got this errors:
>>>>>>>>> ...
>>>>>>>>> [javac]
>>>>>>>>> =
/usr/local/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AAFam=
ilyExperiment_Table.java:24:
>>>>>>>>> illegal start of expression
>>>>>>>>> [javac] tableAtts.put("modification_date", new
>>>>>>>>> GUSTableAttribute("modification_date", "date", =
"java.lang.notdefyet",
>>>>>>>>> -1, , -1, false, false) );
>>>>>>>>> [javac] ^
>>>>>>>>> [javac]
>>>>>>>>> =
/usr/local/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AAFam=
ilyExperiment_Table.java:24:
>>>>>>>>> ')' expected
>>>>>>>>> [javac] tableAtts.put("modification_date", new
>>>>>>>>> GUSTableAttribute("modification_date", "date", =
"java.lang.notdefyet",
>>>>>>>>> -1, , -1, false, false) );
>>>>>>>>> [javac] ^
>>>>>>>>> [javac] 100 errors
>>>>>>>>> BUILD FAILED
>>>>>>>>> /usr/local/GUS/project_home/install/build.xml:26: The =
following error
>>>>>>>>> occurred while executing this line:
>>>>>>>>> /usr/local/GUS/project_home/GUS/build.xml:73: The following =
error
>>>>>>>>> occurred while executing this line:
>>>>>>>>> /usr/local/GUS/project_home/install/build.xml:221: The =
following error
>>>>>>>>> occurred while executing this line:
>>>>>>>>> /usr/local/GUS/project_home/install/build.xml:240: Compile =
failed; see
>>>>>>>>> the compiler error output for details.
>>>>>>>>> I saw you got a similar problem and solved it. Could you =
kindly share
>>>>>>>>> how did you solve that ?
>>>>>>>>> We use:
>>>>>>>>> Java: Java(TM) 2 Runtime Environment, Standard Edition (build
>>>>>>>>> 1.4.2_06-b03)
>>>>>>>>> Java HotSpot(TM) Client VM (build 1.4.2_06-b03, mixed mode)
>>>>>>>>> Apache Ant version 1.6.2 compiled on July 16 2004
>>>>>>>>> Thanks, Alberto
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> From: marc jackson <dechon@ho...>
>>>>>>>>> Re: problems building gus on redhat linux
>>>>>>>>> 2004-12-17 10:21
>>>>>>>>> That wasn"t it, but things are resolved. For now. :)
>>>>>>>>> Thanks for your help!
>>>>>>>>> Regards,
>>>>>>>>> Marc
>>>>>>>>> >From: Steve Fischer <sfischer@pc...>
>>>>>>>>> >To: marc jackson <dechon@ho...>
>>>>>>>>> >CC: gusdev-gusdev@li...
>>>>>>>>> >Subject: Re: [Gusdev-gusdev] problems building gus on =
redhat linux
>>>>>>>>> >Date: Fri, 17 Dec 2004 07:36:37 -0500
>>>>>>>>> >
>>>>>>>>> >Marc-
>>>>>>>>> >
>>>>>>>>> >i suspect that you haven"t defined the environment =
variable
>>>>>>>>> >$GUS_CONFIG_FILE.
>>>>>>>>> >
>>>>>>>>> >it should be discussed in the docs.
>>>>>>>>> >
>>>>>>>>> >steve
>>>>>>>>> >
>>>>>>>>> >[sfischer@cottus ~]$ echo $GUS_CONFIG_FILE
>>>>>>>>> >/home/sfischer/.gus.properties
>>>>>>>>> >[sfischer@cottus ~]$ more $GUS_CONFIG_FILE
>>>>>>>>> >databaseLogin=3Dyour_login
>>>>>>>>> >databasePassword=3Dyour_password
>>>>>>>>> >
>>>>>>>>> >readOnlyDatabaseLogin=3Dyour_login
>>>>>>>>> >readOnlyDatabasePassword=3Dyour_password
>>>>>>>>> >
>>>>>>>>> =
>dbiDsn=3Ddbi:Oracle:host=3Dcbilbld.pcbi.upenn.edu;sid=3Dcbilbld
>>>>>>>>> #your
>>>>>>>>> >dsn string here
>>>>>>>>> >
>>>>>>>>> >coreSchemaName=3DCore
>>>>>>>>> >userName=3Dsfischer #your user name here
>>>>>>>>> >group=3DCBIL # your group name here
>>>>>>>>> >project=3DGUS # your project here
>>>>>>>>> >[sfischer@cottus ~]$
>>>>>>>>> >
>>>>>>>>> >
>>>>>>>>> >
>>>>>>>>> >marc jackson wrote:
>>>>>>>>> >
>>>>>>>>> >>Hello,
>>>>>>>>> >> I"m having a problem getting GUS to install/compile. =
I"ve
>>>>>>>>> been
>>>>>>>>> >>able to configure the database, but when I go to run =
the
>>>>>>>>> "ga"
>>>>>>>>> >>command to bootstrap in data. it pukes. In working =
with Ed
>>>>>>>>> >>Robinson, we got to the 2nd build. Specifically:
>>>>>>>>> >> build GUS install -append returns the following =
error:
>>>>>>>>> >> [exec] Required property "group" must be specified =
in at
>>>>>>>>> >>/opt/gus/gus_home/lib/perl/CBIL/Util/PropertySet.pm =
line 53.
>>>>>>>>> >>BUILD FAILED
>>>>>>>>> >>/opt/gus/project_home/install/build.xml:26: The =
following
>>>>>>>>> error
>>>>>>>>> >>occurred while executing this line:
>>>>>>>>> >>/opt/gus/project_home/GUS/build.xml:190: exec =
returned: -1
>>>>>>>>> >> any help would be appreacited.
>>>>>>>>> >> Regards,
>>>>>>>>> >> Marc
>>>
>>>
|
