Re: [Gusdev-gusdev] GUS 3.5 Release

[Chris S. <sto...@pc...>]

Aaron,
Sounds good. Can you post the CDAT schema? Do you think we should be 
thinking of a phylo/evo schema (in the sense of DoTS, RAD, etc.) 
instead of just adding tables. views to DoTS?

Mind you, we don't want to derail GUS3.5 release with major changes. 
That's for 4.0. I'm thinking of either sliding in a table or two if 
that works for 3.5 but keeping an eye out for needed changes for 4.0.

Cheers,
Chris

On Jan 26, 2005, at 11:22 AM, Aaron J. Mackey wrote:

>
> On Jan 26, 2005, at 11:13 AM, Michael Saffitz wrote:
>
>> GUS doesn't currently support phylogeny/evolutionary data, but are 
>> very open to adding it to GUS.  Do you have a schema (rough or 
>> otherwise) in mind?
>
> I think the upcoming comparative genomics efforts here (and elsewhere) 
> will certainly require support for evolutionary analyses.  I would 
> encourage those doing the schema design to consider both multiple 
> sequence alignments and trees (including associated bootstraps, 
> likelihood, branch lengths, etc) as experimental results that may be 
> computed in many different fashions.  I.e. don't fall into the trap of 
> the "one true tree", because it doesn't exist.
>
> I'd be very interested to be involved in this effort, and to give a 
> talk on my own phylogenetic sequence database (CDAT) for consideration 
> as one possible schema to mimic.
>
> -Aaron
>
> --
> Aaron J. Mackey, Ph.D.
> Dept. of Biology, Goddard 212
> University of Pennsylvania       email:  am...@pc...
> 415 S. University Avenue         office: 215-898-1205
> Philadelphia, PA  19104-6017     fax:    215-746-6697
>
>
>
> -------------------------------------------------------
> This SF.Net email is sponsored by: IntelliVIEW -- Interactive Reporting
> Tool for open source databases. Create drag-&-drop reports. Save time
> by over 75%! Publish reports on the web. Export to DOC, XLS, RTF, etc.
> Download a FREE copy at http://www.intelliview.com/go/osdn_nl
> _______________________________________________
> Gusdev-gusdev mailing list
> Gus...@li...
> https://lists.sourceforge.net/lists/listinfo/gusdev-gusdev