Menu
▾
▴
Re: [Gusdev-gusdev] Problem building WDK on Fedora
|
From: Dave B. <db...@pc...> - 2005-01-13 14:51:10
|
Hi Alberto, The output that you sent is actually fine! There are no error messages that I can see, and the output indicates that you built successfully. The "no existing files, doing nothing" message is a simple statement that shouldn't concern you. Are there any other symptoms that lead you to believe there is a problem with the build? Dave On Thu, 13 Jan 2005, Alberto Davila wrote: > HI Dave, > > Thanks... > > I think we made a mistake trying to build "GUS" instead the "WDKToySite", > then we started again, have a look: > > [poliana@phytomonas gus_home]$ build WDKToySite install -append > > ant -f /usr/local/GUS/project_home/install/build.xml install > -Dproj=WDKToySite -DtargetDir=/usr/local/GUS/gus_home -Dcomp= > -DprojectsDir=/usr/local/GUS/project_home -Dappend=true -logger > org.apache.tools.ant.NoBannerLogger | grep ']' > > [echo] . > [echo] Installing WDK/Model > [copy] Copying 13 files to /usr/local/GUS/gus_home/bin > [mkdir] Created dir: /usr/local/GUS/gus_home/lib/xml > [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/xml > [mkdir] Created dir: /usr/local/GUS/gus_home/lib/rng > [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/rng > [mkdir] Created dir: /usr/local/GUS/gus_home/lib/perl/WDK/Model > [copy] Copying 24 files to /usr/local/GUS/gus_home/lib/perl/WDK/Model > [copy] Copying 10 files to /usr/local/GUS/gus_home/lib/java > [mkdir] Created dir: /usr/local/GUS/gus_home/doc/WDK/Model > [copy] Copying 9 files to /usr/local/GUS/gus_home/doc/WDK/Model > [jar] Building jar: /usr/local/GUS/gus_home/lib/java/WDK-Model.jar > [echo] . > [echo] IMPORTANT REMINDER: If you have not already done so, > please copy any .jar needed for database connectivity (such as > oracle-classes12.jar) into /usr/local/GUS/gus_home/lib/java. The WDK > does not supply these. See the installation instructions available at > www.gusdb.org/wdk for details. > [echo] . > [echo] . > [echo] Installing WDK/Controller > [copy] Copying 3 files to /usr/local/GUS/gus_home/lib/java > [jar] Building jar: /usr/local/GUS/gus_home/lib/java/WDK-Controller.jar > [echo] . > [echo] Installing WDK/View > [copy] Copying 2 files to /usr/local/GUS/gus_home/lib/java > [concat] No existing files and no nested text, doing nothing > [echo] . > [echo] Installing WDKToySite/Model > [copy] Copying 5 files to /usr/local/GUS/gus_home/config > [mkdir] Created dir: /usr/local/GUS/gus_home/doc/WDKToySite/Model > [copy] Copying 1 file to /usr/local/GUS/gus_home/doc/WDKToySite/Model > [mkdir] Created dir: /usr/local/GUS/gus_home/data/WDKToySite/Model > [copy] Copying 13 files to /usr/local/GUS/gus_home/data/WDKToySite/Model > [concat] No existing files and no nested text, doing nothing > > Here is our ".bashrc" file: > > [root@phytomonas poliana]# more .bashrc > # .bashrc > > PATH=$PATH:/usr/local/pgsql/bin; export PATH > PATH=$PATH:/usr/java/j2sdk1.4.2_06/bin; export PATH > PATH=$PATH:/usr/local/apache-ant-1.6.2/bin; export PATH > export ANT_HOME=/usr/local/apache-ant-1.6.2 > export JAVA_HOME=/usr/java/j2sdk1.4.2_06 > export CATALINA_HOME=/usr/local/jakarta-tomcat-5.0.28 > export GUS_HOME=/usr/local/GUS/gus_home > export PROJECT_HOME=/usr/local/GUS/project_home > export GUS_CONFIG_FILE=$GUS_HOME/.gus.properties > PATH=$GUS_HOME/bin:$PROJECT_HOME/install/bin:$ANT_HOME/bin:$PATH; export PATH > export PERL5LIB=/usr/local/GUS/gus_home/lib/perl > > Here is the software/system we are using: > > Ant: apache-ant-1.6.2 > TomCat: jakarta-tomcat-5.0.28 > Java: Java(TM) 2 Runtime Environment, Standard Edition (build 1.4.2_06-b03) > Java HotSpot(TM) Client VM (build 1.4.2_06-b03, mixed mode) > Postgres: postgresql-7.4.6 > Perl: 5.8.3 > Fedora Core 1 > Kernel: 2.4.22-1.2199.nptl > > and, we are using the scripts for the "PostgreSQL" version posted by > Jeetendra (by the way, Jeetendra plugins are working fine, "SubmitRow" went > OK then just using "LoadTaxon", the load iof the latter is taking more than > 48 hours ... and still running...) > > any further suggestions to debug the WDK install ? > > Thanks, Alberto > > > > > > > At 13:49 10/1/2005, Dave Barkan wrote: >> Hello, >> >> This error message is usually indicative of the build system being unable >> to connect to your database instance. >> >> Make sure that you have configured your $GUS_CONFIG_FILE and your >> environment variables as detailed in steps 5 and 9 of the GUS installation >> instructions at >> >> http://www.gusdb.org/documentation/install-setup.html >> >> Off the top of my head, that is the most likely solution to your problem, >> but if that doesn't work, I would suggest asking your DBA if they can think >> of anything regarding your local connection and database instance. >> >> Dave >> >> On Fri, 7 Jan 2005, davila wrote: >> >>> Hi Marc, >>> >>> We just tried to install the WDK 1.1. by using: >>> >>> build GUS install -append >>> >>> then got this errors: >>> >>> ... >>> [javac] >>> /usr/local/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AAFamilyExperiment_Table.java:24: >>> illegal start of expression >>> [javac] tableAtts.put("modification_date", new >>> GUSTableAttribute("modification_date", "date", "java.lang.notdefyet", -1, >>> , -1, false, false) ); >>> [javac] ^ >>> [javac] >>> /usr/local/GUS/project_home/GUS/Model/src/java/org/gusdb/model/DoTS/AAFamilyExperiment_Table.java:24: >>> ')' expected >>> [javac] tableAtts.put("modification_date", new >>> GUSTableAttribute("modification_date", "date", "java.lang.notdefyet", -1, >>> , -1, false, false) ); >>> [javac] ^ >>> [javac] 100 errors >>> >>> BUILD FAILED >>> /usr/local/GUS/project_home/install/build.xml:26: The following error >>> occurred while executing this line: >>> /usr/local/GUS/project_home/GUS/build.xml:73: The following error occurred >>> while executing this line: >>> /usr/local/GUS/project_home/install/build.xml:221: The following error >>> occurred while executing this line: >>> /usr/local/GUS/project_home/install/build.xml:240: Compile failed; see the >>> compiler error output for details. >>> >>> I saw you got a similar problem and solved it. Could you kindly share how >>> did you solve that ? >>> >>> We use: >>> >>> Java: Java(TM) 2 Runtime Environment, Standard Edition (build >>> 1.4.2_06-b03) >>> Java HotSpot(TM) Client VM (build 1.4.2_06-b03, mixed mode) >>> >>> Apache Ant version 1.6.2 compiled on July 16 2004 >>> >>> Thanks, Alberto >>> >>> >>> >>> >>> >>> From: marc jackson <dechon@ho...> >>> Re: problems building gus on redhat linux >>> 2004-12-17 10:21 >>> >>> That wasn"t it, but things are resolved. For now. :) >>> >>> Thanks for your help! >>> >>> Regards, >>> >>> Marc >>> >From: Steve Fischer <sfischer@pc...> >>> >To: marc jackson <dechon@ho...> >>> >CC: gusdev-gusdev@li... >>> >Subject: Re: [Gusdev-gusdev] problems building gus on redhat linux >>> >Date: Fri, 17 Dec 2004 07:36:37 -0500 >>> > >>> >Marc- >>> > >>> >i suspect that you haven"t defined the environment variable >>> >$GUS_CONFIG_FILE. >>> > >>> >it should be discussed in the docs. >>> > >>> >steve >>> > >>> >[sfischer@cottus ~]$ echo $GUS_CONFIG_FILE >>> >/home/sfischer/.gus.properties >>> >[sfischer@cottus ~]$ more $GUS_CONFIG_FILE >>> >databaseLogin=your_login >>> >databasePassword=your_password >>> > >>> >readOnlyDatabaseLogin=your_login >>> >readOnlyDatabasePassword=your_password >>> > >>> >dbiDsn=dbi:Oracle:host=cbilbld.pcbi.upenn.edu;sid=cbilbld #your >>> >dsn string here >>> > >>> >coreSchemaName=Core >>> >userName=sfischer #your user name here >>> >group=CBIL # your group name here >>> >project=GUS # your project here >>> >[sfischer@cottus ~]$ >>> > >>> > >>> > >>> >marc jackson wrote: >>> > >>> >>Hello, >>> >> I"m having a problem getting GUS to install/compile. I"ve been >>> >>able to configure the database, but when I go to run the >>> "ga" >>> >>command to bootstrap in data. it pukes. In working with Ed >>> >>Robinson, we got to the 2nd build. Specifically: >>> >> build GUS install -append returns the following error: >>> >> [exec] Required property "group" must be specified in at >>> >>/opt/gus/gus_home/lib/perl/CBIL/Util/PropertySet.pm line 53. >>> >>BUILD FAILED >>> >>/opt/gus/project_home/install/build.xml:26: The following error >>> >>occurred while executing this line: >>> >>/opt/gus/project_home/GUS/build.xml:190: exec returned: -1 >>> >> any help would be appreacited. >>> >> Regards, >>> >> Marc > > |
