Re: [Gusdev-gusdev] Adding features to the sequence

[Angel P. <an...@pc...>]

Jeetendra Soneja wrote:

>Steve,
>
>     I'm referring to the last case in the list that Angel mentioned. It
>deletes the feature if it is in Db but not in the file. We have a
>scenario where new features are predicted and uploaded in different
>steps. Thus, while uploading the new features predicted in later
>steps, we don't want the features uploaded during previous steps to
>be deleted.
>
>  --Jeetendra.
>
>  
>
Not that hard to fix. Add this line (assuming $flag is your new option) 
to line 1106

next if ($flag);


This will skip the deletion step in the if {} else{}  block
-angel

>
>  
>
>>Jeetendra-
>>
>>I just talked to Angel who wrote this parser a long time ago.
>>
>>He says that the parser is supposed to:
>>  - match the existing features in the db against the new ones mentioned
>>in the gb file
>>  - if a feature is in the file but not in the db, it adds the feature
>>  - if the feature is in both, it leaves the feature alone
>>  - if the feature is in the db but not in the file, it deletes it.
>>
>>is this not what you are observing?
>>
>>steve
>>
>>Jeetendra Soneja wrote:
>>
>>    
>>
>>>Hi all,
>>>
>>>When we try to upload an existing sequence (and features) using the
>>>GBParser, it updates the features of that sequence, i.e. it removes the
>>>old and inserts the new ones.
>>>
>>>However, is there a way to just ADD features (of any type) to the
>>>existing
>>>sequence in the GUS DB ?
>>>
>>>Thanks a lot for your help,
>>>Jeetendra.
>>>
>>>
>>>
>>>
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>
>
>  
>